Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20049g00001 ATGACCAATTGTTATTCTTGGACACTAATTGATAGGATATCAGGCATTGCTGCGAAGTACGTTGGGAAGCCAGTGGTGAGTTACCCACTACTCTCCCCTTCATCGGTTCCACCTCGTCCTCTAGAACTCGGCATTGGTGGTTTCGGAGGACAACCAGGAATTGGTGGAGGAGATATATATGGAGCTGGAGATCTTCTTAGATCAATAAGTGGACCAACTGAAGCTGATAAACCAATGATAATCGAACTAGCCGTTGCTGCAATGGAAGAACTCATTGGAATGGCACAAATGGGTGATCCTCTTTGGTTAACTACACTTGAAGGTGGTTCCATACTCAATGAAGAAGAATATGTTAGGTCTTTTCCTAGAGGAATTGGTCCAAAACCAGCTGGTTTTAAATGTGAAGCTTCAAGAGAAACTTCTGTTGTCATCATGAATCATGTTAACCTTGTTGAGATCCTCATGGACGTGAACCAATGGTCCACAGTTTTTTCTGGTATTGTTTCAAGAGCAATGACATTGGAAGTGCTATCAACTGGGGTGGCAGGCAACTACAATGGTGCATTACAAGTGATGACAGCAGAACTTCAAGTACCTTCACCACTAGTGCCAACTAGAGAGAGTTATTTTGTAAGGTATTGTAAGCAACATGCTGATGGTACTTGGGCAGTA 672 0.4286 MTNCYSWTLIDRISGIAAKYVGKPVVSYPLLSPSSVPPRPLELGIGGFGGQPGIGGGDIYGAGDLLRSISGPTEADKPMIIELAVAAMEELIGMAQMGDPLWLTTLEGGSILNEEEYVRSFPRGIGPKPAGFKCEASRETSVVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAV 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20049g00001 224 Pfam START domain 83 224 IPR002913 GO:0008289
Trme20049g00001 224 SUPERFAMILY Bet v1-like 73 224 - -
Trme20049g00001 224 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 10 224 IPR042160 -
Trme20049g00001 224 CDD START_ArGLABRA2_like 77 224 - -
Trme20049g00001 224 ProSiteProfiles START domain profile. 73 224 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20049g00001 Trme-Chr20049 8 1200 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme20049g00001 10 224 Homeobox Transcription Factor Family AT4G04890 73.023 2.02e-107 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20049g00001 K09338 - gmx:100797992 352.058