Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2002g00001 ATGGCTCCTGTTGCCAAATTCTTTGCTCCTAATTCCGATGGCGTTTCTTTAGGACCCTTGATTTCTTTTCATCAAGATAAGATCTTCTTAGATAGCTGGTCCCAGCTTAAAGATGCAATTCGTGAAGGGGGTGTTCCATTCACCAGGGTTCATGGCACGCATCCCTTTGGGTATGCCAGCTCCGACGCAAGGTTCAATCAAGTTTTTAATACAGCAATGATCAATCATACAACTATTGTTATGAAGAAGGTTCTTGAATGCTACAAAGGTTTTGATGAGGTCAAAAGGCTTGTGGATGTTGGTGGTGGTCTTGGCGTCAACATTAACTTGATCACTTCAAAATACCCTCATATGAAGGGTATCAATTTCGACTTGCCTCATGTCATACAACATGCCCCTTCCTATCCTGGAATTGAACACGTTGGGGGAGATATGTTTCAAACTGTGCCTAAAGCAGATGCTATCTTTATGAAGTGGATACTTCATGACTGGAGTGATGAGCAGTGCTTGAAGGTTTTGAAGAATTGCTATGATGCTATTCCAGATGATGGAAAGGTGATTGTTTTGGAGGCTGTTCTTTCTATTATACCCGAGAATAATGCTGCCTGGAAATTTGCGGCCCAATCAGATGTTCTGATGATGACTCAAAGTCCAGGAGGGAAAGAGCGAACTGAGCAAGAATTCATGGATTTAGCAAATGGAGCTGGATTTAG 713 0.4222 MAPVAKFFAPNSDGVSLGPLISFHQDKIFLDSWSQLKDAIREGGVPFTRVHGTHPFGYASSDARFNQVFNTAMINHTTIVMKKVLECYKGFDEVKRLVDVGGGLGVNINLITSKYPHMKGINFDLPHVIQHAPSYPGIEHVGGDMFQTVPKADAIFMKWILHDWSDEQCLKVLKNCYDAIPDDGKVIVLEAVLSIIPENNAAWKFAAQSDVLMMTQSPGGKERTEQEFMDLANGAGF 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2002g00001 237 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 13 237 IPR029063 -
Trme2002g00001 237 PANTHER O-METHYLTRANSFERASE 2 237 IPR016461 GO:0008168
Trme2002g00001 237 Pfam O-methyltransferase domain 33 237 IPR001077 GO:0008171
Trme2002g00001 237 Gene3D Vaccinia Virus protein VP39 10 237 IPR029063 -
Trme2002g00001 237 FunFam Caffeic acid O-methyltransferase 9 237 - -
Trme2002g00001 237 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 237 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2002g00001 Trme-Chr2002 1 2750 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2002g00001 1 237 Monolignol Biosynthesis Gene Families AT5G54160 56.962 1.69e-105 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2002g00001 K13066 - gmx:100803633 408.297