Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme2001g00001 GTTTTTCATGGGCAACCCATGCATACTAATGTTCCTGCTGCTCCACATCCTCCAGCCATGCGTCCTAGGGTGCGGGCTAGAAGAGGACAGGCTACAGATCCTCACAGCATAGCTGAGCGATTACGCAGAGAAAGAATAGCAGAAAGAATCAGGGCGCTGCAAGATTTGGTTCCAAGTGTCAACAAGACAGATAGAGCTGCCATGTTAGATGAAATTGTGGATTACGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTCGATTGGGCGGAGCAGGTGCAGTGGCACCACTGGTAACTGACATCCCATTATCATCAGTCGAGCAATCTAACAAATCCAGCGGTGGTGATCAGGAAGAAGGCAGTGAAGGTGGAAGAAACCGACCGGCTTGGGACAAGTGGTCGAATGATGGCACAGAAAAACAGGTAGCTAAGCTTATGGAAGAAAATGTTGGAGCTGCCATGCAACTGCTTCAATCAAAGGCGCTTTGCATCATGCCAATCTCCCTGGCGTCAGCGATATACCAGTCACAGCCACCAGACAGCTCTAGTATAGTCAAGCCTGAAACCAATCCTCCCCCATAG 591 0.4907 VFHGQPMHTNVPAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQDLVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEQSNKSSGGDQEEGSEGGRNRPAWDKWSNDGTEKQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYQSQPPDSSSIVKPETNPPP 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme2001g00001 196 SMART finulus 36 85 IPR011598 GO:0046983
Trme2001g00001 196 Gene3D - 25 87 IPR036638 GO:0046983
Trme2001g00001 196 FunFam Basic helix-loop-helix transcription factor 25 87 - -
Trme2001g00001 196 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 175 - -
Trme2001g00001 196 MobiDBLite consensus disorder prediction 1 34 - -
Trme2001g00001 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 30 79 IPR011598 GO:0046983
Trme2001g00001 196 MobiDBLite consensus disorder prediction 108 138 - -
Trme2001g00001 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 28 89 IPR036638 GO:0046983
Trme2001g00001 196 Pfam Helix-loop-helix DNA-binding domain 35 79 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme2001g00001 Trme-Chr2001 465 2677 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme2001g00001 1 195 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 80.203 3.69e-99 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trme2001g00001 HLH 6.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme2001g00001 - - qsa:O6P43_006960 313.538