Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme20012g00001 ATGGCAACACCAACACCAGCACCAGCACCAGCACCAACTAGTGGTGGAGATGCTTCTGGCAAGAAAATTAGAAAGCCATACACCATTACCAAGTCCAGGGAAAGCTGGTCTGACGAAGAACACGACAAGTTTCTTGAAGCTCTTCAATTATTTGATAGGGATTGGAAGAAAATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCCCAAAAGTACTTCTTAAAGGTTCAAAAAAATGGAACACTAGCCCATGTTCCTCCTCCTCGTCCTAAGCGCAAAGCTATTCATCCTTATCCACAAAAAGCAACCAAAAATGTTTTGTTGCCACTGCCAGCATCCATTGCTTATGGATCATCCACAAATAGCCTTTTACCTGCAGGGTATGTCACATGGGATGAAACTTCCATGCTCATGGATAATTGTCAGGATGAACTCAACAATCTTCATGGAAATGAAG 472 0.4174 MATPTPAPAPAPTSGGDASGKKIRKPYTITKSRESWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLLPLPASIAYGSSTNSLLPAGYVTWDETSMLMDNCQDELNNLHGNE 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme20012g00001 157 CDD SANT 35 78 IPR001005 -
Trme20012g00001 157 MobiDBLite consensus disorder prediction 1 26 - -
Trme20012g00001 157 Pfam Myb-like DNA-binding domain 33 78 IPR001005 -
Trme20012g00001 157 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 80 IPR006447 GO:0003677
Trme20012g00001 157 Gene3D - 36 83 - -
Trme20012g00001 157 FunFam protein REVEILLE 6 isoform X1 35 83 - -
Trme20012g00001 157 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
Trme20012g00001 157 SUPERFAMILY Homeodomain-like 27 83 IPR009057 -
Trme20012g00001 157 PANTHER SWI/SNF COMPLEX-RELATED 15 137 - -
Trme20012g00001 157 SMART sant 32 80 IPR001005 -
Trme20012g00001 157 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Trme20012g00001 157 ProSiteProfiles SANT domain profile. 31 84 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme20012g00001 Trme-Chr20012 56 829 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trme20012g00001 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme20012g00001 - - gsj:114372630 247.669