Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19998g00001 GTTTATCATCCTCATGGAAATATGACAACTGGTCCTGTTGATTCTAATGCTGAACTCAAATGCGGTATTTGCAATGTTGCGAAAGATGACAATCTTATAATAATATGTGATCTTTGTGATACTGCTTCCCATACATATTGTGTTGGCTTGGGCTACACCGTTCCTGAAGGTGATTGGTTTTGTCATGATTGTGCTGCTGCTGCCCGGGAGACTAATGCTAATGACGGGTTAGACCAACAAAATGTTAAGCTAACGGCTGAACCTGGTGTAGTCATCTTAGATAATGTGAGAGGAACAAGCAGCCAAGTATTCAGNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNATCCGTCTTCTAGTATTCCTTTATTTAATAGAGTGAGTAGATCTGAAGGTAAAAAACCTATGTCGGACGTCCAGCGTGCGAAACATAAGGTTCAGGTGCTTCGTGAAAATTGGAATGCTTTAAGAAGTGGTAAATTAAGTTTCCATAGCAAATCATTTCAATCTGGTGGCACAAGTAGTCAAAAAGAAGGTTCTAGTTCTTTANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNGTGGCTTGGAAGACGATGTTCGCAAAGCTTGGAAAATGTGGGATAAGGTAAAGATGACGAAACAGACTCCTAGAAGAACTATCAGCATTCCACAGGGAGTGGATAATGATCCTCCATGTAGTGGTGCTGGAGAAAAATCATTTGCACCTCGTAGTTGCCCAGAATTGAAAAACCAACAGCCCAGAACATTAGACTTTAAGTACATCAGAATGGAGGAGCAGCGTGACTATTCTAGTCTCCAAAAGAATTTGGAAAATCACCGGTCTCCAATATTGGGAGAGAAAAGGCAAAGTAGGGTCACATGTGACGAGATGCTACAACATGTGAGGAACAATACTACTCATTCAGAAGGATACAGGGAACGTCCATTGCCTGGAAAGGCCCATACTAGTACCCACGGTGCTCCTTGTCACGAAGAAAGAAATGTTGCGAAGGAACAAAGACAGTCTGCTAACTTGGTAACTTCAGTAGGTTCAGCACCCTCTAGTGGCCAATCTGGCCGTGTCTTCACCTCTAATAAGGATATGGGTATTTTCAATAAAGAAAAGACGTTGGCCAAAAGCTTTGGGAATGGGATCACGAAAAATATTGAGGATTCAAAAACAGAGATCCAGT 1264 0.3742 VYHPHGNMTTGPVDSNAELKCGICNVAKDDNLIIICDLCDTASHTYCVGLGYTVPEGDWFCHDCAAAARETNANDGLDQQNVKLTAEPGVVILDNVRGTSSQVFXXXXXXXXXXXXXPSSSIPLFNRVSRSEGKKPMSDVQRAKHKVQVLRENWNALRSGKLSFHSKSFQSGGTSSQKEGSSSLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLEDDVRKAWKMWDKVKMTKQTPRRTISIPQGVDNDPPCSGAGEKSFAPRSCPELKNQQPRTLDFKYIRMEEQRDYSSLQKNLENHRSPILGEKRQSRVTCDEMLQHVRNNTTHSEGYRERPLPGKAHTSTHGAPCHEERNVAKEQRQSANLVTSVGSAPSSGQSGRVFTSNKDMGIFNKEKTLAKSFGNGITKNIEDSKTEIQ 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19998g00001 421 Coils Coil 218 222 - -
Trme19998g00001 421 MobiDBLite consensus disorder prediction 165 188 - -
Trme19998g00001 421 MobiDBLite consensus disorder prediction 165 183 - -
Trme19998g00001 421 PANTHER F18C1.6 PROTEIN 1 420 - -
Trme19998g00001 421 Coils Coil 184 184 - -
Trme19998g00001 421 MobiDBLite consensus disorder prediction 332 351 - -
Trme19998g00001 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 77 IPR013083 -
Trme19998g00001 421 SUPERFAMILY FYVE/PHD zinc finger 13 66 IPR011011 -
Trme19998g00001 421 MobiDBLite consensus disorder prediction 244 273 - -
Trme19998g00001 421 ProSiteProfiles Zinc finger PHD-type profile. 18 67 IPR019787 -
Trme19998g00001 421 SMART PHD_3 20 65 IPR001965 -
Trme19998g00001 421 Pfam PHD-finger 21 65 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19998g00001 Trme-Chr19998 101 1364 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19998g00001 21 69 C2H2 Transcription Factor Family AT3G01460 42.000 1.44e-09 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trme19998g00001 PHD 4.1e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19998g00001 - - vvo:131634523 489.189