Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19986g00001 ATGGCGTTAGTCCACCGCCGCCGCAGCCCCAATCTCCGTCTCCCAGAAATCGCCGACCACCGTCCTCGTTTCCCTGTTCCTCTTCCTGCCAACATCTACAAACACCCTTCTTCCTCCTCATCCGCCACCGTTGCCAGCGGTGACACTCTTGCTCCCGGCGACCTCGAAAAACTCGCTGTCCTCGGCCATGGCAACGGCGGCACCGTCTACAAAGTCCGCCACAAAGTCACCTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNCCGCCGTACACTTGCTGAAATCAACATCCTCCGCCGTGCCACCGATTGTCCCAACATCGTCAAATACCACGGCTCCTTCGAAAAACCCACCGGCGACATCTCCATCTTAATGGAATTTATGGATTCCGGCAGCCTAGAAACCGACCTCAAAACAAATGGCACATTCTCGGAATCGAAACTATCCACGGTGGCGCGTGATGTTTTAAACGGCCTCGCGTATCTTCACGCGCGTAACATAGCACACCGTGACATTAAACCTTCGAACATCCTCGTAAACAACAAAAACGAGGTAAAGATTGCTGATTTTGGTGTGAGTAAATTCATGGGTCGCACGCTTGAAGCATGTAACTCTTACGTTGGCACGTGTGCTTATATGAGTCCTGAACGGTTTGACCCGGAAGTTTATGGCGGGAATTATAACGGTTTTTCAGCTGATATATGGAGTTTGGGTTTAACCCTATTTGAACTTTATGTGGGTCATTTTCCATTTCTTCAATCGGGTCAACGACCTGATTGGGCTACACTTATGTGTGCGATTTGCTTTTCCGACCCTCCGAGCCTCCCCGAGACTGCTTCACCGGAGTTTCGTAACTTTGTCGAGTGTTGCCTTAAGAAGGAATCCGGTGAACGGTGGACGGCGGCTCAATTGTTGACCCATCCGTTTTTGTGTAAAGACATGGAAGTTTGTTAA 975 0.4779 MALVHRRRSPNLRLPEIADHRPRFPVPLPANIYKHPSSSSSATVASGDTLAPGDLEKLAVLGHGNGGTVYKVRHKVTSXXXXXXXXXXXXXXXXXRRTLAEINILRRATDCPNIVKYHGSFEKPTGDISILMEFMDSGSLETDLKTNGTFSESKLSTVARDVLNGLAYLHARNIAHRDIKPSNILVNNKNEVKIADFGVSKFMGRTLEACNSYVGTCAYMSPERFDPEVYGGNYNGFSADIWSLGLTLFELYVGHFPFLQSGQRPDWATLMCAICFSDPPSLPETASPEFRNFVECCLKKESGERWTAAQLLTHPFLCKDMEVC 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19986g00001 324 Gene3D Phosphorylase Kinase; domain 1 34 136 - -
Trme19986g00001 324 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 45 319 - -
Trme19986g00001 324 SUPERFAMILY Protein kinase-like (PK-like) 52 319 IPR011009 -
Trme19986g00001 324 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Trme19986g00001 324 SMART serkin_6 55 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19986g00001 324 Pfam Protein kinase domain 56 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19986g00001 324 ProSiteProfiles Protein kinase domain profile. 55 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19986g00001 324 Gene3D Transferase(Phosphotransferase) domain 1 138 323 - -
Trme19986g00001 324 CDD PKc_MAPKK_plant_like 54 317 - -
Trme19986g00001 324 FunFam Mitogen-activated protein kinase 2 137 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19986g00001 Trme-Chr19986 174 1148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19986g00001 1 321 MAP Kinase Kinase Gene Family AT1G73500 55.864 1.04e-115 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Trme19986g00001 Pkinase 2.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19986g00001 K20604 - gmx:100804100 496.893