Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme199759g00001 ATGATGATGAACAATAAAGTACCACCGAGACCTCGTACTAGAGTTGGAAAGTACGAGATGGGAAAAACAATTGGTGAAGGAAGTTTTGCGAAAGTTAAGTTAGCAAAGAATGTTGAAAATGGTGATTATGTTGCAATCAAAATTCTTGATCGTAATCATGTGCTTCGTCACAATATGATGGATCAGCTGAAGAGAGAAATTTCAGCTATGAAGATAATTAATCATCCAAATGTTGTTAAAATATTTGAG 249 0.3414 MMMNNKVPPRPRTRVGKYEMGKTIGEGSFAKVKLAKNVENGDYVAIKILDRNHVLRHNMMDQLKREISAMKIINHPNVVKIFE 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme199759g00001 83 Gene3D Phosphorylase Kinase; domain 1 9 83 - -
Trme199759g00001 83 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 14 83 - -
Trme199759g00001 83 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Trme199759g00001 83 ProSiteProfiles Protein kinase domain profile. 18 83 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme199759g00001 83 Pfam Protein kinase domain 18 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme199759g00001 83 FunFam Non-specific serine/threonine protein kinase 3 83 - -
Trme199759g00001 83 SUPERFAMILY Protein kinase-like (PK-like) 9 83 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme199759g00001 Trme-Chr199759 19 349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme199759g00001 6 83 CBL-interacting serine-threonine protein kinases AT1G01140 69.231 1.40e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme199759g00001 Pkinase 3.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme199759g00001 - - gmx:100791002 139.428