Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme199563g00001 ATGATATCGGCTTTGCAGCATCCGAATCTTGTGAAGCTTTATGGATGTTGCATTGAAGGAAACCAATTGCTGCTTGTATATGAGTACATGAAGAACAATAGTCTTGCTCGCGCTCTTTTCGGTAAACCGGAACAGAAGTTGAACTTGGACTGGAGCACAAGAATGAAGATATGTGTCGGGATAGCAAGAGGTTTAGCTTATCTTCACGAGGAATCAAGGTTG 222 0.4234 MISALQHPNLVKLYGCCIEGNQLLLVYEYMKNNSLARALFGKPEQKLNLDWSTRMKICVGIARGLAYLHEESRL 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme199563g00001 74 Pfam Protein tyrosine and serine/threonine kinase 2 71 IPR001245 GO:0004672|GO:0006468
Trme199563g00001 74 SUPERFAMILY Protein kinase-like (PK-like) 2 70 IPR011009 -
Trme199563g00001 74 ProSiteProfiles Protein kinase domain profile. 1 74 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme199563g00001 74 Gene3D Transferase(Phosphotransferase) domain 1 1 74 - -
Trme199563g00001 74 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme199563g00001 Trme-Chr199563 1 308 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme199563g00001 1 74 Receptor kinase-like Gene Family AT1G53430 83.784 2.36e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme199563g00001 PK_Tyr_Ser-Thr 3.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme199563g00001 - - psat:127136958 150.984