Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme199456g00001 ATTCAAATCTTTGTGAAAACTACGACTGAAAAGATGATCCACGTGGAGGTAGAGAGTTCAGACATGATTGCTAATGTGAAAGCGAAAATTCAAGACTTAGAATGGTTCTTGCTGCACAAGCAATGTTTGGTCTTGGCCAATAAGAAACTAGATGACCTCCACACCATCGCTGATTACAACATCAAAGAGAAGTCAATTCTCCGCCTTGTCTCCCTCTCCGAGTAG 225 0.4178 IQIFVKTTTEKMIHVEVESSDMIANVKAKIQDLEWFLLHKQCLVLANKKLDDLHTIADYNIKEKSILRLVSLSE 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme199456g00001 74 Pfam Ubiquitin family 3 70 IPR000626 GO:0005515
Trme199456g00001 74 ProSiteProfiles Ubiquitin domain profile. 1 70 IPR000626 GO:0005515
Trme199456g00001 74 Gene3D - 1 71 - -
Trme199456g00001 74 SMART ubq_7 1 72 IPR000626 GO:0005515
Trme199456g00001 74 PRINTS Ubiquitin signature 11 31 IPR019956 -
Trme199456g00001 74 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trme199456g00001 74 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trme199456g00001 74 PANTHER UBIQUITIN 2 70 - -
Trme199456g00001 74 SUPERFAMILY Ubiquitin-like 1 70 IPR029071 -
Trme199456g00001 74 FunFam Polyubiquitin-C 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme199456g00001 Trme-Chr199456 197 421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme199456g00001 1 70 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 58.571 9.07e-21 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme199456g00001 - K08770 ath:AT1G65350 79.3369