Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme199270g00001 ATGGAACAAGTGAAGACACTTGAGAAGAGTTTTGAATTGGGAAACAAACTTGAACCTGAGAGGAAAATGCAGCTAGCAAGGGCTCTTGGATTGCAACCAAGACAGATTGCTATATGGTTTCAAAACAGAAGGGCTAGGTGGAAGACAAAACAGTTGGAGAAAGACTATGATGTTCTTAAAAGACAATATGATTCTATTAAGGCTGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGACAGAG 249 0.3896 MEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDSIKADNDALQAQNQKLQTE 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme199270g00001 83 Gene3D - 1 48 - -
Trme199270g00001 83 Pfam Homeodomain 2 48 IPR001356 GO:0003677
Trme199270g00001 83 SMART HOX_1 1 54 IPR001356 GO:0003677
Trme199270g00001 83 Pfam Homeobox associated leucine zipper 50 83 IPR003106 GO:0006355|GO:0043565
Trme199270g00001 83 PRINTS Lambda-repressor HTH signature 21 30 IPR000047 GO:0003677
Trme199270g00001 83 PRINTS Lambda-repressor HTH signature 30 46 IPR000047 GO:0003677
Trme199270g00001 83 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Trme199270g00001 83 Coils Coil 42 83 - -
Trme199270g00001 83 CDD homeodomain 1 51 IPR001356 GO:0003677
Trme199270g00001 83 ProSitePatterns 'Homeobox' domain signature. 25 48 IPR017970 GO:0000981|GO:0006355
Trme199270g00001 83 ProSiteProfiles 'Homeobox' domain profile. 1 50 IPR001356 GO:0003677
Trme199270g00001 83 FunFam homeobox-leucine zipper protein ATHB-13-like 1 44 - -
Trme199270g00001 83 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 83 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme199270g00001 Trme-Chr199270 119 367 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme199270g00001 1 83 Homeobox Transcription Factor Family AT1G69780 87.952 6.64e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trme199270g00001 Homeodomain 3.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme199270g00001 K09338 - gmx:100801479 165.622