LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme199228g00001	ATGGTTAGTTCAGGGGCTAGTGCTCATGCTGAAGTCAATTTGGACGAATTAAATCCCAGTGGCAACATACCAACTGGGCTTCAAGCATCGCAAGTTGATGGTAGGGGCAGTGGACTTTCAGTTACTGCCGACAAGGCATCCGATGATGGATACAATTGGCGAAAATATGGGCAGAAGCTTGTTAAAGGATGTGAATTTCCACGCAGTTATTACAAATGCACACATCCTAACTGTGAAGTGAAGAAACTCTTTGAACGGTCTCATGATGGCCAAATTACCGAAATAGTTTACAAAGGAACACATGATCATCCTAAACCTCAACCAAGCCGTCG	332	0.4398	MVSSGASAHAEVNLDELNPSGNIPTGLQASQVDGRGSGLSVTADKASDDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSHDGQITEIVYKGTHDHPKPQPSRR	111

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme199228g00001	111	Pfam	WRKY DNA -binding domain	48	104	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trme199228g00001	111	PANTHER	WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED	33	110	IPR044810	GO:0003700
	Trme199228g00001	111	Gene3D	WRKY domain	39	107	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Trme199228g00001	111	MobiDBLite	consensus disorder prediction	1	44	-	-
	Trme199228g00001	111	MobiDBLite	consensus disorder prediction	18	37	-	-
	Trme199228g00001	111	SMART	WRKY_cls	47	105	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trme199228g00001	111	FunFam	WRKY transcription factor	37	107	-	-
	Trme199228g00001	111	ProSiteProfiles	WRKY domain profile.	42	106	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Trme199228g00001	111	SUPERFAMILY	WRKY DNA-binding domain	45	106	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme199228g00001	Trme-Chr199228	1	332	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme199228g00001	20	111	WRKY Transcription Factor Family	AT4G26640	73.469	1.03e-44	149

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Trme199228g00001		WRKY	8.3e-25	CL0274