Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19921g00001 CAGAGACTAACGGGGAAGGATGTTTCATGTATGCGTGCGGTTTCAGCAAGAGAATTGAATCAGTTTTCAAAAGCACAGGATGGTCCTATGACGCGTCTGGCCTCCATTAGGGAAGTGGCGCAGTTGTCAAATGCAAGAATTGTTTTGGTAACGGAGGATATGGGTTTCGATACACGGTCCTCGCAAGAACGTGGAAAAGCCTCTTTACCAGAACCTGATATTGAGACATTGAAGAGCAGCAGTGATTCTTTTGGGGAAATCGATCCAAGTTCATTTTCTGGTGCTACTCACCCTCCAGAACCTATCGATACTGATCTCATGCGAACGGTTTTTGTACCAATAGGTCAAAACAAATCTGAGGCTGGATGCTTAACGAAGAACATGTCTTTGAAGGGTCCTTTCCTAGAAGATCTTTCAATTCGTAGTCTCACTAAGAAACCAACCCTAGCTGTTGTTTCTCCTTCAGAAAGCACGGTTGAAGAATCAAATGGGGACACAGGAAACTTAGTCGCACCATTTTCAGGCGCTTGTGCATCACAGAATACTGAAAACTCTCTACCTTCCCTAGATTCTGAAGAAAAAGAATGTGTTTGGGATTCTTCTTTGCCTCCAAGTGAAAATGTCAGTCCGCTTAGTAGTATTGACAGTAGTAGTGTTGTCAGAACAATGAGCATTGCTAATAGTTGTGCGAGTACATATCGCAGCGATGCATTCACTAGTGACGGCATGATTAGTATAGACAAGAATTGTGATAGTATTAAAGGAAGTGTAAGAGGGGATTCACTTGAGAGTGCAAAAACTAGTGCTAGTCGAGCAAGCGATAGCAGTGGTCTAAGTGATGACAGCAACTGGAGTAACATCACTGGCAGTGCCAATAAACCACACAAAGGAAATGATCCTAGGTGGAAGGCTATCCTTGCCGTCCGAGCACGGGATGGAATTTTAGGCATGAGTCATTTTAAGTTACTCAGACGACTTGGTTGTGGTGATATCGGAAGTGTGTATCTCTCTGAGCTGAGTGCAACTCGGTGTTATTTTGCAATGAAAGTTATGGACAAGGCATCCCTTGCTGCTAGAAAGAAACTGATTAGGGCACAAACCGAAAGGGAGATATTGCAGTTGCTCGACCATCCATTTCTACCTACGTTGTATACTCATTTTGAGACTGACAGATTTTCATGTTTGGTAATGGAATACTGTCCCGGTGGTGATCTACACACTTTAAGACAACGGCAACCAGGGAAACATTTCTCGGAATATGCTGCACGGTATGTTTGTACCTTACAGATATAA 1293 0.4331 QRLTGKDVSCMRAVSARELNQFSKAQDGPMTRLASIREVAQLSNARIVLVTEDMGFDTRSSQERGKASLPEPDIETLKSSSDSFGEIDPSSFSGATHPPEPIDTDLMRTVFVPIGQNKSEAGCLTKNMSLKGPFLEDLSIRSLTKKPTLAVVSPSESTVEESNGDTGNLVAPFSGACASQNTENSLPSLDSEEKECVWDSSLPPSENVSPLSSIDSSSVVRTMSIANSCASTYRSDAFTSDGMISIDKNCDSIKGSVRGDSLESAKTSASRASDSSGLSDDSNWSNITGSANKPHKGNDPRWKAILAVRARDGILGMSHFKLLRRLGCGDIGSVYLSELSATRCYFAMKVMDKASLAARKKLIRAQTEREILQLLDHPFLPTLYTHFETDRFSCLVMEYCPGGDLHTLRQRQPGKHFSEYAARYVCTLQI 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19921g00001 430 PANTHER FLIPPASE KINASE 1-RELATED 85 424 - -
Trme19921g00001 430 Pfam Protein kinase domain 321 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19921g00001 430 MobiDBLite consensus disorder prediction 74 90 - -
Trme19921g00001 430 SUPERFAMILY Protein kinase-like (PK-like) 302 426 IPR011009 -
Trme19921g00001 430 MobiDBLite consensus disorder prediction 261 297 - -
Trme19921g00001 430 MobiDBLite consensus disorder prediction 58 103 - -
Trme19921g00001 430 MobiDBLite consensus disorder prediction 261 293 - -
Trme19921g00001 430 FunFam Serine/threonine-protein kinase D6PK-like 318 403 - -
Trme19921g00001 430 SMART serkin_6 320 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19921g00001 430 ProSiteProfiles Protein kinase domain profile. 320 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19921g00001 430 Gene3D Phosphorylase Kinase; domain 1 314 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19921g00001 Trme-Chr19921 2 1294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19921g00001 73 424 AGC Kinase Gene Family AT2G44830 67.887 1.16e-154 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme19921g00001 Pkinase 2.8e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19921g00001 - - gmx:100800019 658.292