Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19919g00001 ATGGCAGTGACAGAGAAATGTGATGTATTCAGCTTTGGTGTCTTAGCATTTGAAATTCTAACAGGAAAACACCCTGGTGATCTTGTTTCTTACATACAAACATCTAATGATCAAAAGATAGATTTCAAAGAGATTTTAGATCCTCGCCTCGCTTCGCCTCCAAAGAACATTTTGAAGGAATTGGCATTGGTTGCAAATTTAGCTCTTTCTTGTTTACACACAAATCCTCAATCTAGACCAACCATGAGAAGCATTGCTCAGTTGCTAGAAATGGAGACTGCATTTAACACTTGA 294 0.3776 MAVTEKCDVFSFGVLAFEILTGKHPGDLVSYIQTSNDQKIDFKEILDPRLASPPKNILKELALVANLALSCLHTNPQSRPTMRSIAQLLEMETAFNT 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19919g00001 97 Gene3D Transferase(Phosphotransferase) domain 1 1 91 - -
Trme19919g00001 97 Pfam Protein tyrosine and serine/threonine kinase 3 89 IPR001245 GO:0004672|GO:0006468
Trme19919g00001 97 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19919g00001 97 PANTHER LEUCINE RICH REPEAT KINASE 2 1 93 - -
Trme19919g00001 97 SUPERFAMILY Protein kinase-like (PK-like) 3 90 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19919g00001 Trme-Chr19919 510 803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19919g00001 4 89 Receptor kinase-like Gene Family AT1G25320 36.170 1.07e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Trme19919g00001 PK_Tyr_Ser-Thr 9.4e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19919g00001 - - gmx:100814345 155.221