Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1990g00001 ATTTCACTACTGAACCCCGAGCTGGCATGGGATGCGTCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTAGGACGTTCTCTGGAAGAAAAGGCAAGGATTCAGGCATCCAGTGATATGAATGAACTTCTTTCACTAATATCTACTCAGTCAAGACTTGTCATTACGTCATCAGAAGGTTCCCCATCTACTGACAGTGTGCTTAGCTCAGACTCAATTTGCGTGGAAGTTCCAACTGATGATATTCGAGTAGGAGACTCAGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAAGGGTCATTGCAGGAAGAAGCGTTGTGGACGAATCCATGCTTACAGGAGAATCACTTCCTGTATTTAAGGAGGAAGGCCTCACAGTTTCAGCAGGAACTATAAACTGGGATGGTCCTTTAAGGATTGAATCTTCTTCAACTGGCTCCAACACAATGATATCCAAGATTGTACGCATGGTCGAGGATGCTCAATCGCGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATTTAGTATAATGACTCTGTCAGCAGCAACATTTGCATTTTGCCCCGACACTTCACAAGAAAATGAGTTGTGTCCCATGCTTATTTTAGTAGCCATGCTTCTTAGAATCTTGCTATGGAGTTTATGA 681 0.4361 ISLLNPELAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGSPSTDSVLSSDSICVEVPTDDIRVGDSVLVLPGETIPIDGRVIAGRSVVDESMLTGESLPVFKEEGLTVSAGTINWDGPLRIESSSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVFSIMTLSAATFAFCPDTSQENELCPMLILVAMLLRILLWSL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1990g00001 226 FunFam Copper-transporting ATPase 1, putative 36 167 - -
Trme1990g00001 226 SUPERFAMILY Calcium ATPase, transduction domain A 73 163 IPR008250 -
Trme1990g00001 226 PANTHER ATP7, ISOFORM B 11 198 - -
Trme1990g00001 226 Gene3D - 35 167 - -
Trme1990g00001 226 Pfam E1-E2 ATPase 67 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1990g00001 Trme-Chr1990 142 2730 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1990g00001 10 196 Primary Pumps ATPases AT5G44790 37.968 5.16e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1990g00001 K17686 - gmx:100127402 354.369