Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19903g00001 ATTGCAGATGTTTGGTCTTGTGGGGTGACATTATATGTGATGTTGGTGGGTGCTTATCCTTTTGAGGATCCAGAGGAACCTAAAAATTTCCGCAAGACAATACATAGGATTTTAAATGTTCAGTATTCAATTCCTGACTATGTTCATATATCTCCTGAATGCCAGCATCTGATTTCAAGGATTTTTGTTGCTGATCCTGCAAAGAGAATAAGTATTCCAGAGATTAGAAACCATGAGTGGTTTTTGAAGAACCTTCCAACTGATCTCATGGAAGATAATGAAACCAACAACCAGTACGAGGAGCCAGATCAACCAACACAAAGTGTCGAAGATATCATGCAGATAATCGCCGAGGCCACCATTCCTGCAGCAGGAACTCAGACCCTCAATCCGTATCTTACCGGAAGTTTGGATATTGATGATGACATGGATGATGATTTAGACACTGATCCTGACCTTGATATTGATAGCAGTGGAGAAATAGTTTATGCTATGTAA 498 0.3996 IADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILNVQYSIPDYVHISPECQHLISRIFVADPAKRISIPEIRNHEWFLKNLPTDLMEDNETNNQYEEPDQPTQSVEDIMQIIAEATIPAAGTQTLNPYLTGSLDIDDDMDDDLDTDPDLDIDSSGEIVYAM 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19903g00001 165 Gene3D Transferase(Phosphotransferase) domain 1 1 132 - -
Trme19903g00001 165 ProSiteProfiles Protein kinase domain profile. 1 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19903g00001 165 PANTHER SERINE/THREONINE KINASE 2 112 - -
Trme19903g00001 165 Pfam Protein kinase domain 2 81 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19903g00001 165 SUPERFAMILY Protein kinase-like (PK-like) 2 119 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19903g00001 Trme-Chr19903 107 901 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19903g00001 2 85 CBL-interacting serine-threonine protein kinases AT5G25110 44.048 3.45e-18 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trme19903g00001 Pkinase 9.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19903g00001 K14498 - pvy:116143312 285.419