Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme198954g00001 ATGGAAGATGAGAGAGATGCTGATGCTGCAATTCGCGCTCTTGATCGGATAGAATTTGGTCGAAAGGGGCGCAGACTTCGTGTAGAATGGACAAAGGGAGAACGTGGCATCCGAAGGCCTGCTGAGCGTCCAAAAAGATCTTCAGCTAATGCAAGACCATCAAAGACCTTATTTGTAATTAATTTTGACACATACCATACCAGAACAAGGGACCTGGAGAGGCACTTTGAGCCATATGGTAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCATTTGTTCAGTATGATTCAGAAGATGATGCTTCCAAAGCACTGGAAGCTACAAATAA 332 0.4367 MEDERDADAAIRALDRIEFGRKGRRLRVEWTKGERGIRRPAERPKRSSANARPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYDSEDDASKALEATN 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme198954g00001 110 SMART rrm1_1 56 110 IPR000504 GO:0003723
Trme198954g00001 110 Gene3D - 50 110 IPR012677 -
Trme198954g00001 110 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 55 110 - -
Trme198954g00001 110 MobiDBLite consensus disorder prediction 33 49 - -
Trme198954g00001 110 MobiDBLite consensus disorder prediction 33 52 - -
Trme198954g00001 110 Gene3D - 1 49 IPR012677 -
Trme198954g00001 110 SUPERFAMILY RNA-binding domain, RBD 1 110 IPR035979 GO:0003676
Trme198954g00001 110 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 110 IPR000504 GO:0003723
Trme198954g00001 110 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 110 IPR000504 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme198954g00001 22 108 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 8.89e-07 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme198954g00001 K12893 - gmx:100781534 187.193