Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19885g00001 AGGCTAGAAATGCTACTTAGAAGTCGCGATGTTGAGCAATGGATGAGGCACCGTCGCTTACCTGAAAATCTAAGAAGGAGAGTACGACAGGCTGAACGATATAATTGGGCAGCAACAAGAGGAGTCAACGAAGAAACGCTTCTTGTGAATTTGCCAGAAGATCTCCAAATTGACATTAGGCGTCATCTTTTCAATTTTATAAAGAAAATTCGAATTTTCTCATTGATGGATGAGCCTATTTTAGATGCAATTTGTGAGAGACTAAGACAGAAAACATACATAAATGGAAGTAGAATTATGAGTCAAGGTGGTGTAGTTGAGAAGATGGTGTTTGTTGTTCGTGGAAAATTGGAGAGTATTAATGGTGAAAATGGAATTGGAGTTTCTTTANNNGAAGGAGATGCTTGTGGTGAAGAACTTCTTACATGGTATCTTGAACATTCTTCTGTTAGCAAAGGTATAACAGTAATTGATACCATAACATGTCCCAAGATAAGCTTATAG 504 0.373 RLEMLLRSRDVEQWMRHRRLPENLRRRVRQAERYNWAATRGVNEETLLVNLPEDLQIDIRRHLFNFIKKIRIFSLMDEPILDAICERLRQKTYINGSRIMSQGGVVEKMVFVVRGKLESINGENGIGVSLXEGDACGEELLTWYLEHSSVSKGITVIDTITCPKISL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19885g00001 167 Gene3D Jelly Rolls 70 164 IPR014710 -
Trme19885g00001 167 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 151 - -
Trme19885g00001 167 Gene3D Helix hairpin bin 5 64 - -
Trme19885g00001 167 SUPERFAMILY cAMP-binding domain-like 7 141 IPR018490 -
Trme19885g00001 167 CDD CAP_ED 72 141 IPR000595 -
Trme19885g00001 167 ProSiteProfiles cAMP/cGMP binding motif profile. 72 167 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19885g00001 Trme-Chr19885 308 1235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19885g00001 2 161 Ion Channels AT3G17700 69.375 1.20e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19885g00001 K05391 - gmx:112997782 247.669