Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme198844g00001 CCCACTGATTCTCCGGCACCGTCCAACAAACATTTCAGAGGAGTTCGTAAGCGTCCATGGGGCCGTTTCGCCGCCGAGATCCGCGATCCATGGAAAAAAACTCGCAAGTGGCTCGGCACCTTCGACACCGCCGAAGAAGCCGCAAGAGCTTACGACGACGCCGCCAGAGCTCTCCGTGGACCAAAAGCCAAGACCAACTTCTCATACTTCGTCGCTCCTACTATTCTTCCACTTCCTCAGCCTCACGATGGCGGTAATGGAAGACCGGTTGAGTTTTGGGGTCCGCCGGTTTATTTCACCGCCGGTGCTCCGGTGAGATCGGAGTATAAGGGTTACAAGTTGGAGAATATTGTGGTGAGTAAGGAAGAGGTGGAGGAGAAGAAGCCGTTTTTGTTTGATCTTAACTTGCCGGCGCCGCTTGTTTGA 426 0.5399 PTDSPAPSNKHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDDAARALRGPKAKTNFSYFVAPTILPLPQPHDGGNGRPVEFWGPPVYFTAGAPVRSEYKGYKLENIVVSKEEVEEKKPFLFDLNLPAPLV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme198844g00001 141 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
Trme198844g00001 141 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Trme198844g00001 141 Gene3D AP2/ERF domain 10 69 IPR036955 GO:0003700|GO:0006355
Trme198844g00001 141 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Trme198844g00001 141 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Trme198844g00001 141 FunFam Ethylene-responsive transcription factor 2 10 69 - -
Trme198844g00001 141 CDD AP2 10 67 IPR001471 GO:0003700|GO:0006355
Trme198844g00001 141 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 10 88 - -
Trme198844g00001 141 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Trme198844g00001 141 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme198844g00001 Trme-Chr198844 1 426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme198844g00001 11 67 AP2-EREBP Transcription Factor Family AT1G50640 89.474 5.94e-30 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Trme198844g00001 AP2 9.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme198844g00001 K09286 - gmx:100816599 186.037