Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19881g00001 ATGTTCAAAGAAATTGAAGTCCTTGGGATGTATAGGCATCGAAATTTGATCAAATACACAGACTACTGGATTGGAGGGCATTATGGTTTAGTATTATATGAATTCATGGAAAATGGAACCCTTTATGATATTTTACATGAAAACACGCCCCCACCACCCTTGACGTGGAATGTCAGGCTTAAGATTGCAGTTGGAATTGCTGAAGGGCTAGCATATCTACATTACGACTGTGTGCCACCAACAGTACACCGAGACATCAAACCAAAGAACATACTTCTTGATGCTAATATGGAGCCTCTTATAGCTGATCTGGGTACTGCCCTAATAAGGGAGTTTTCGGAGGATTCTTATAGTCATTTTGAAACTAGGGAAATGCTTTTGTCGCACATTGTTGGTACCCCAGGCTATTTTGCACCAG 418 0.4091 MFKEIEVLGMYRHRNLIKYTDYWIGGHYGLVLYEFMENGTLYDILHENTPPPPLTWNVRLKIAVGIAEGLAYLHYDCVPPTVHRDIKPKNILLDANMEPLIADLGTALIREFSEDSYSHFETREMLLSHIVGTPGYFAP 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19881g00001 139 Gene3D Transferase(Phosphotransferase) domain 1 1 139 - -
Trme19881g00001 139 Pfam Protein kinase domain 2 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19881g00001 139 PANTHER OS01G0750732 PROTEIN 3 139 - -
Trme19881g00001 139 SUPERFAMILY Protein kinase-like (PK-like) 2 139 IPR011009 -
Trme19881g00001 139 ProSiteProfiles Protein kinase domain profile. 1 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19881g00001 Trme-Chr19881 187 604 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19881g00001 1 139 Receptor kinase-like Gene Family AT1G17750 47.857 2.40e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme19881g00001 Pkinase 3.9e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19881g00001 - - tpra:123922286 229.18