Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19871g00001 GGTCTTGCAAAGAGCGGAATCAATGCAATTACAATGCACATTGTTGGAACACAAGGGTACATTTCGCCCGAATATCTAGCCGATGGTATTGTGTCAACAAAGATGGATGTATTTTCTTTTGGTGTTGTGTTGCTTGAATTGATTTCTGGAAAAGAAGTTATTGATGATGAGGGAAATGTTTTGTGGGCTAATGCTATTAAAACATTTGAAGTGAAAAATGAACAAGAAAAGGCTAGGAGACTTAAGGAATGGTTGGATAAGGATATTTTAAGGGAGACATGTTCAATGGAAAGTTTGATGGGTGTACTTAATGTTGCAATTGCTTGTTTGCATAGAGATCCATCAAAGAGGCCTAGCATTATAGATATTGTTTATTCACTTAGTAAATGTGAAGACACTGGATTTGAACTCTCAGATGATGGGTTTGGTTCACAAAACTTGGTGGCTAGCTTCTATAAAATTGCGATGGATCACCGTAATTCTGACATACTCACTGAGAGCAAATCTACCTTCTTCGTCAATGGTCGGGTGAAAGCCATCATAGAAGGCAGGGGCATGCCTGAACCGATTGCTACTGAAGAAATTTTTGTAATATTGATGTGCCTCATTCTAGAGGACGAAACTATTAGTAGACCATGTACCGTTGGGAAGTTGAAGTCTATGAACACAATTTCGCTTCCTTCTGATGATAGCTTGAGTGTGGAAAAAANNNNNNTTTTTATCTCTGAACTTGACCCATTGCTCTCTAGATTTTTGATACCAATGCATCTCTTCTTGGAAGAGGATGTGGTTGTATTCGCGCTGAAGGTCACGCTTTAG 819 0.3858 GLAKSGINAITMHIVGTQGYISPEYLADGIVSTKMDVFSFGVVLLELISGKEVIDDEGNVLWANAIKTFEVKNEQEKARRLKEWLDKDILRETCSMESLMGVLNVAIACLHRDPSKRPSIIDIVYSLSKCEDTGFELSDDGFGSQNLVASFYKIAMDHRNSDILTESKSTFFVNGRVKAIIEGRGMPEPIATEEIFVILMCLILEDETISRPCTVGKLKSMNTISLPSDDSLSVEKXXXFISELDPLLSRFLIPMHLFLEEDVVVFALKVTL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19871g00001 272 Pfam Protein kinase domain 1 124 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19871g00001 272 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19871g00001 272 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 1 130 - -
Trme19871g00001 272 SUPERFAMILY Protein kinase-like (PK-like) 3 127 IPR011009 -
Trme19871g00001 272 Gene3D Transferase(Phosphotransferase) domain 1 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19871g00001 Trme-Chr19871 1 1271 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19871g00001 14 129 Receptor kinase-like Gene Family AT1G33260 38.017 4.34e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trme19871g00001 Pkinase 4.7e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19871g00001 - - gmx:100802872 255.758