Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme19861g00001 | CAAGTTATCAAAGGATGGGATGTAGGAATCAAAACAATGAAGAAAGGTGAAAATGCCCTTTTCACCATTCCACCTGAGTTAGCTTATGGTGAATCCGGTTCTCCTCCAACTATTCCTCCCAATGCTACTCTACAATTTGATGTTGAGCTGCTGTATTGGACTAGTGTGAAGGATATATGTAAGGATGGAGGATTGTTTAAGACAATAGTTAAGGAGGGGGAGAAATGGGAAAACCCCAAGGATCCTGATGACGTCTTTGTTAAGTATGAAGCACGTCTTGACGATGGAACGCTTGTGGCAAAATCTGATGGGGTGGAATTCACTGTGAAGGAGGGTCATTTTTGTCCTGCACTGTCAAAGGCTGTTAAGACCATGAAGAAGGGAGAGAAAGTGGTCTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGCAAGCCAGCTCACGGTGATGAAGGTGCAGTTCCACCTAATGCAACATTGCAGATTACTCTCGA | 497 | 0.4406 | QVIKGWDVGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLYWTSVKDICKDGGLFKTIVKEGEKWENPKDPDDVFVKYEARLDDGTLVAKSDGVEFTVKEGHFCPALSKAVKTMKKGEKVVLTVKPQYGFGEKGKPAHGDEGAVPPNATLQITL | 165 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme19861g00001 | 165 | SUPERFAMILY | FKBP-like | 1 | 58 | - | - | |
| Trme19861g00001 | 165 | Gene3D | - | 1 | 55 | IPR046357 | GO:0003755 | |
| Trme19861g00001 | 165 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 1 | 54 | IPR001179 | GO:0003755 | |
| Trme19861g00001 | 165 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 62 | 162 | - | - | |
| Trme19861g00001 | 165 | Gene3D | - | 56 | 165 | IPR046357 | GO:0003755 | |
| Trme19861g00001 | 165 | FunFam | Peptidylprolyl isomerase | 57 | 165 | - | - | |
| Trme19861g00001 | 165 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 77 | 162 | IPR001179 | GO:0003755 | |
| Trme19861g00001 | 165 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 1 | 51 | IPR001179 | GO:0003755 | |
| Trme19861g00001 | 165 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 82 | 165 | IPR001179 | GO:0003755 | |
| Trme19861g00001 | 165 | SUPERFAMILY | FKBP-like | 58 | 162 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme19861g00001 | Trme-Chr19861 | 14 | 793 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme19861g00001 | 1 | 53 | Calmodulin-binding Proteins | AT3G25230 | 44.643 | 2.16e-08 | 50.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme19861g00001 | K09571 | - | gmx:100803189 | 313.153 |