Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme198589g00001 GGATATGTTGTTTACCGTGTTCGCGTCCGTAGAGGTGGCAGAAAGAGGCCAGTTTCCAAGGGTATTGTTTATGGTAAGCCAACAAACCAGGGAGTTACACAACTCAAGTTTCAGAGGAGCAAGAGGTCAGTTGCTGAGGAGCGTGCTGGACGTAAGCTTGGT 162 0.4938 GYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLG 54
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme198589g00001 54 Pfam Ribosomal L15 1 53 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trme198589g00001 54 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 53 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trme198589g00001 54 PANTHER RIBOSOMAL PROTEIN L15 1 54 IPR000439 GO:0003735|GO:0005840|GO:0006412
Trme198589g00001 54 MobiDBLite consensus disorder prediction 35 54 - -
Trme198589g00001 54 Gene3D Ribosomal protein l15e 1 54 IPR024794 GO:0003735|GO:0005840
Trme198589g00001 54 MobiDBLite consensus disorder prediction 40 54 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme198589g00001 Trme-Chr198589 283 444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme198589g00001 1 54 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 96.296 4.91e-30 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme198589g00001 K02877 - sspl:121762489 90.5077