Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19838g00001 AGGGAAGATATGGCTAGAAAATATTTCCAACAACTTATTGAAGCTGTTAATCATTGTCACAAAAGAGGGGTTTATCACCGCGATCTTAAACCGGAAAATCTTCTCCTCGACGAAAATGGTGATCTCAAAGTTTCGGATTTCGGTCTCAGTGCACTGTTGGAATCAAAAAAGAAAGATGGTCTTCTTCACACAACATGTGGTACTCCAGCTTATGTAGCACCTGAGGTTATCAAGCAGAAAGGCTACGATGGAGCCATGGCAGATATTTGGTCTTGTGGCATTATTCTCTATGTTCTATTAGCTGGTTATCTTCCTTTCAATGATAAAAATCTAATGGAAATGTATAAGAAGATTGCAAAAGCAGAATTCAAGTTTCCGCAATGGTTTCGTTCTGATGCGAAAAGGCTTATTTATAGCATTCTTGATCCTGATCCAAGAACAAGAATTAGTATTAACAATATAATGCAAAATAGTTGGTTTAAAAAAGGGTATAAGCAGATTGAAGGACCAAAATTACCACCTATATCGCTTACGCGCGGCGATGTCTCAGATGTTCATGATGCATTTGATGATTCATCATCACCATCAAATGATCCTCCAAGTCCAATGTCTGTTAAAGATCATGAAGAATATGCTATGAAGCCATATTGTTTCAATGCATTTGATATCATATCACTCACTTCAGGATTTGATCTTTCTGGTTTGTTTGAGAAAGATATGAGTGAAAGACAACATGCAAGATTTGCTACAAAAAAACCACCTTCAATAGTTGTGTCAAAACTTGAAGAAATAGCACAATTAGATGGTAGATTTAAGGTTAAGAAGCAAAATGGGATTGTAAGATTGGAGGGAAATGAGACAGGGATAAATGAACAACTTAGTATAGATACAGAAATCTTTGAAGTTTCTTCTTCAGTTTATATTGTTGAGGTGAACAAAATTGTTGGAGACATGTTGGAATATAGGAATTTCTGGAACCAGTTGTTAAAGCCTTCTCTAAATGAAATTGTTTGGGTTTGGCAAGAATATGAATAG 1035 0.3575 REDMARKYFQQLIEAVNHCHKRGVYHRDLKPENLLLDENGDLKVSDFGLSALLESKKKDGLLHTTCGTPAYVAPEVIKQKGYDGAMADIWSCGIILYVLLAGYLPFNDKNLMEMYKKIAKAEFKFPQWFRSDAKRLIYSILDPDPRTRISINNIMQNSWFKKGYKQIEGPKLPPISLTRGDVSDVHDAFDDSSSPSNDPPSPMSVKDHEEYAMKPYCFNAFDIISLTSGFDLSGLFEKDMSERQHARFATKKPPSIVVSKLEEIAQLDGRFKVKKQNGIVRLEGNETGINEQLSIDTEIFEVSSSVYIVEVNKIVGDMLEYRNFWNQLLKPSLNEIVWVWQEYE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19838g00001 344 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 2 327 - -
Trme19838g00001 344 MobiDBLite consensus disorder prediction 186 206 - -
Trme19838g00001 344 Pfam Protein kinase domain 2 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19838g00001 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 24 36 IPR008271 GO:0004672|GO:0006468
Trme19838g00001 344 Pfam NAF domain 216 275 IPR004041 GO:0007165
Trme19838g00001 344 FunFam Non-specific serine/threonine protein kinase 1 167 - -
Trme19838g00001 344 ProSiteProfiles Protein kinase domain profile. 1 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19838g00001 344 SMART serkin_6 1 160 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19838g00001 344 Gene3D Transferase(Phosphotransferase) domain 1 1 193 - -
Trme19838g00001 344 ProSiteProfiles NAF domain profile. 213 237 IPR018451 GO:0007165
Trme19838g00001 344 FunFam Non-specific serine/threonine protein kinase 213 338 - -
Trme19838g00001 344 Gene3D Kinase associated domain 1, KA1 212 339 - -
Trme19838g00001 344 SUPERFAMILY Protein kinase-like (PK-like) 2 212 IPR011009 -
Trme19838g00001 344 CDD CIPK_C 219 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19838g00001 Trme-Chr19838 334 1368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19838g00001 1 341 CBL-interacting serine-threonine protein kinases AT5G45820 57.018 2.18e-138 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme19838g00001 Pkinase 1.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19838g00001 K07198 - gmx:100807927 484.567