Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme198373g00001 ATGGTGAAACTCGCCGAAGCTGTTAAAACGATGTTAACGGATTTCGAATCAGCGATTCAGAAAGATTCTTCAAAGAAACCAATCACCGGCGGTGGAGTCCACCCGCTCACGCGCTATGTAATGAACTACATCACGTTTCTCGCCGATTACAGCGGCGTGCTTTCCGATATCATTTTCGATTTGCCGCAATCTCCGTTACCGGAATCTTACTATCAAAGNCCCATGCGCGGTGAAAACAATTCATCTTCCGATATATCGGAGAAAATCGCGTGGTTGATTCTCGTTCTTCTCTGTAAACTTGACGGAAAAGCTGAACTCTACAAAGACGTAGCACTTTCTTATCTTTTTCTTGCGAATAACATGCAATACGTCGTCGTAAAGGTTCGAAGATCAAAC 396 0.4394 MVKLAEAVKTMLTDFESAIQKDSSKKPITGGGVHPLTRYVMNYITFLADYSGVLSDIIFDLPQSPLPESYYQXPMRGENNSSSDISEKIAWLILVLLCKLDGKAELYKDVALSYLFLANNMQYVVVKVRRSN 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme198373g00001 132 Pfam Exo70 exocyst complex subunit 3 131 IPR046364 GO:0000145|GO:0005546|GO:0006887
Trme198373g00001 132 PANTHER EXOCYST COMPLEX PROTEIN EXO70 2 132 IPR004140 GO:0000145|GO:0006887
Trme198373g00001 132 SUPERFAMILY Cullin repeat-like 3 132 IPR016159 -
Trme198373g00001 132 Gene3D Exocyst complex component Exo70 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme198373g00001 Trme-Chr198373 49 444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme198373g00001 1 132 EXO70 exocyst subunit family AT5G59730 59.420 1.30e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme198373g00001 K07195 - gmx:100808078 224.942