Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1980g00001 ACTTTGAACTGGGAAAATGGTTACCAGAAAAGTAATCAGTCTTTGGGGAGTATGTGGGGGGACATCAGTTTCGAATCCCCGGACGATGTATATTCTTCAAGAAGTGAAGGAACTGATGATTCAGGAGATTATTCAGTTCGACTTCTCATGATCGAAATGTCTCATCGAAAATACAGCTTGGGAGAAGGGGTTGTTGGCAAATTAGCACTCATCAAGGAGCATTTTTGGGCTTCCTGTGAGGATATTTTCGCTGGTAAATTTGACACTAATTTAATTCCTGAGTGTCCTGATGAGTGGCTTCTTCAATTTGCATCAGGCATCAAGACTATTGTGCTGGTACCAGTTCTTCCACAAGGAGTGTTGCAATTTGGTTCATTTAAAACGGTTGCCGAAGACCTAGAATTTGTTACCAATATCAAGGAGCAATTCAATTTCATTCATTGTCTGGAAGCTAATAATACTACACCTTTGAACTTGGGAACTGATTCTCAAGATTGGTCATTCTCAGCTCTATCCCATTACTTGATGGATAGCTTCGACGAATCTTCGTCAGCTAGTACTTCTCTCAATATGAATAAGTCAACAAGATTTCCTCAGGATGATGACTATTGGTTATCTAGAGAATTTCAGCCAAAATCTCTTAAAAGATCACATGAAAATGAGATGGTTTCATCATCATTTGAAACGTCAATTGATCCAAAACATATTGGTTATGTGGAGACAAAATCAAATCATTTGGTAGAAGAGATATGGCCCTGGTCTCACTTTGTCGACAATGAAGGAAAGTTCGGTGAGATGTCGAATGGATTTAGTTCTTACTCTGATAATAATATGACTGAGCAAAAATTTGGAGGCACTGAAACTGGTCATGTTGATGTTAAGAATTTCAATTTCAATGACTTCTCAACTGTTCCTTCAATGATTGAATTGGACAAAGCAATTGGATCTGTTGCATATAGACAGAAAGGAAAATCTATACCAAAATATATCTCAGATGAGGATACTTTCAGCAGTTCAACTTTAATATCCAATAAAAAGCAACATGATCATATTAAAAGTTTGGAGTTTCCTGAAGGAACGGATCCAGAATATCTATTAGATGCGGTTGTTGGCAATTTATACAGCGCCTCTGATGATACTTCATGTAGATCGATCAGTGTTAGGTCTCTTGTAACAATGCCGTCAGAGTTTACTGTCCCCATTCAGCCAAAAATCTATTCTGAAGAAAGCAACATGTTTCTGAAAAGTTCCGATGTTGGTAGTGATCTTATGCCTCCGGTTACGGCTAAGGGTAAAGATGTATTCACGGACCATTATACATCAACTTTTGATGGAAATTCAAGCTTATTGGTCGATGAGGAACCACAGGAAAAGGTCAATAGTCATATGGAGCCTATTAGTCGACCAAAGCTCTCTAGCGCGAGCAAGAAAAGAGCTAAAGTAGGTAACAACAAAAATTCAAGGCCCAGAGATAGACAGCTGATCATGGACAGGATGAAGGAGTTGAGGGAACTTATCCCAGATGGTGGAAGGTGTAGCATCGACAACCTCTTGGAACGAACCGTAAAGCACATGATGTACTTAAGAATGGTAACAAGCCAGGCTGATAAACTGAAACGATTTGCTGATTGTGAGGTAAATTAA 1644 0.3887 TLNWENGYQKSNQSLGSMWGDISFESPDDVYSSRSEGTDDSGDYSVRLLMIEMSHRKYSLGEGVVGKLALIKEHFWASCEDIFAGKFDTNLIPECPDEWLLQFASGIKTIVLVPVLPQGVLQFGSFKTVAEDLEFVTNIKEQFNFIHCLEANNTTPLNLGTDSQDWSFSALSHYLMDSFDESSSASTSLNMNKSTRFPQDDDYWLSREFQPKSLKRSHENEMVSSSFETSIDPKHIGYVETKSNHLVEEIWPWSHFVDNEGKFGEMSNGFSSYSDNNMTEQKFGGTETGHVDVKNFNFNDFSTVPSMIELDKAIGSVAYRQKGKSIPKYISDEDTFSSSTLISNKKQHDHIKSLEFPEGTDPEYLLDAVVGNLYSASDDTSCRSISVRSLVTMPSEFTVPIQPKIYSEESNMFLKSSDVGSDLMPPVTAKGKDVFTDHYTSTFDGNSSLLVDEEPQEKVNSHMEPISRPKLSSASKKRAKVGNNKNSRPRDRQLIMDRMKELRELIPDGGRCSIDNLLERTVKHMMYLRMVTSQADKLKRFADCEVN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1980g00001 547 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 260 542 IPR043561 GO:0003700|GO:0006355
Trme1980g00001 547 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 47 143 IPR025610 -
Trme1980g00001 547 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 479 528 IPR011598 GO:0046983
Trme1980g00001 547 MobiDBLite consensus disorder prediction 446 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1980g00001 Trme-Chr1980 293 2720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1980g00001 309 543 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 36.929 6.81e-22 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1980g00001 - - gmx:100776855 651.744