Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19805g00001 CACAAGACAAGACAGCATATTGGGCAGTTGGTGAAGGATACATCAGCCAAGCTTAAACAAGCTAGTGACATTGATCACCATGCCGGTGTTAATGCAAGCAAGAAGATAGCAGATGCTAAACTTGCGAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCACAACGTCTTTCAGCTGAGAGAGAAACAGCTTACACTCCTTTTGTTCCACAAACAGTTCTTCCATCGAG 233 0.4249 HKTRQHIGQLVKDTSAKLKQASDIDHHAGVNASKKIADAKLAKDFQAVLKEFQKAQRLSAERETAYTPFVPQTVLPS 77
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19805g00001 77 FunFam Syntaxin 1 70 - -
Trme19805g00001 77 Gene3D - 1 70 - -
Trme19805g00001 77 Pfam Syntaxin-like protein 1 66 IPR006011 GO:0016020
Trme19805g00001 77 SUPERFAMILY t-snare proteins 1 69 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19805g00001 Trme-Chr19805 240 790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19805g00001 1 77 SNARE and Associated Proteins AT5G46860 81.818 7.50e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19805g00001 - - cmos:111431394 145.976