Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19804g00001 ACTAATCTTGCAACCAAAGACACAAGCTGTGATTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAGCCCAACATCCCCCAAGGGATGCAAGTCCTGCAGGACTTTTGTCCATTGCAGAAGAAACTTTAGCAGAGTTTCTTTCGAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGAATCTATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGTGTGGCAGCTAGAGCATGTGGCCTAGTGGGTCTAGAACCTACAAGGGTTGCAGAAATCCTTAAAGATCGGCCCTCGTGGTATCGTGATTGCCGAGCTGTGGATATTCTGAACGTGCTCCCCACAGCAAATGGTGGAACCATTGAGCTGCTTTACATGCAGCTATACGCGCCAACCACATTGGCTCCTGCGCGGGACTTATGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCCTAGTGATATGTGAGAGGTCCCTTAAAAATACACAGAATGGTCCAAGCATGCCTCCTGTGCAGCATTTTGTCAGAGCTGAGATGCTTCCCAGTGGGTACTTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTAGAGGTACAAGAATTCAACTTCTCTTTATTGATATTTTCATCCAACATGAAATAA 693 0.469 TNLATKDTSCDSAVTSGQRSLTAQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPESIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRPSWYRDCRAVDILNVLPTANGGTIELLYMQLYAPTTLAPARDLWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEVQEFNFSLLIFSSNMK 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19804g00001 230 SUPERFAMILY Bet v1-like 37 214 - -
Trme19804g00001 230 CDD START_ArGLABRA2_like 32 214 - -
Trme19804g00001 230 SMART START_1 37 230 IPR002913 GO:0008289
Trme19804g00001 230 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 4 215 IPR044830 GO:0003700
Trme19804g00001 230 MobiDBLite consensus disorder prediction 1 32 - -
Trme19804g00001 230 Pfam START domain 38 214 IPR002913 GO:0008289
Trme19804g00001 230 ProSiteProfiles START domain profile. 28 230 IPR002913 GO:0008289
Trme19804g00001 230 MobiDBLite consensus disorder prediction 1 25 - -
Trme19804g00001 230 Gene3D - 71 219 IPR023393 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19804g00001 Trme-Chr19804 85 1338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19804g00001 2 214 Homeobox Transcription Factor Family AT1G52150 86.385 1.34e-133 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19804g00001 K09338 - cpap:110810169 416.772