Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme197633g00001 ATGAACAGGGCTACTCTTAAAGGGTACTGGAAAGCTACTGGAAATGATCGTCCGGTTAAGCATGACTTAAGGACTGTAGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGTAAGAGAACTAACTGGGTTATGCACGAGTACAGGCTCGTTGAAGAAGAGATGGAGAGGGAGAGGGTTGGGAATGGATCCTCTCAGCCACAGTTACTAAAGACTTTCTGCATTTTGATGTTGATAAAATGA 255 0.4431 MNRATLKGYWKATGNDRPVKHDLRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVEEEMERERVGNGSSQPQLLKTFCILMLIK 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme197633g00001 84 ProSiteProfiles NAC domain profile. 1 83 IPR003441 GO:0003677|GO:0006355
Trme197633g00001 84 Gene3D NAC domain 1 83 IPR036093 GO:0003677|GO:0006355
Trme197633g00001 84 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 58 - -
Trme197633g00001 84 Pfam No apical meristem (NAM) protein 2 54 IPR003441 GO:0003677|GO:0006355
Trme197633g00001 84 SUPERFAMILY NAC domain 2 59 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme197633g00001 Trme-Chr197633 88 418 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme197633g00001 1 60 NAC Transcription Factor Family AT3G10480 76.667 1.27e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trme197633g00001 NAM 2.3e-11 No_clan