Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19754g00001 ATGGTAACCTGTTCCAATATTTTGGTGGTCACGATTCTCATCTTGGTTTCCAATTTCAACATAGGGATATGGCTAGTTAATGGCTGTAGCGGAAGGGATTTCAGATGTGGACCTGATGGTCCACGGATCCGATTTCCCTTCCGACTTAAAGACAAAGAAACTGAACAAAGTTGCGGTTATAATGGCTTTGATCTTACTTGTTCAGACACAAACAAAACTCAAATTGAATTCCCTTCACCTTCTGGGGCAATTATACTCCAAGTCATGAAAATAATTTATCCGGACAACCTTCTATACGTAACTGACCCTGAAAATTGTCTTCCTAGCCAGTTTGTAAAGCTCCTTCGATCACCAATTTCTCCTTTTCAATTCTCTGAGAGTCCCGGATTCAGGTATAACTTCACCATCCTCCATTGTAGTTCATCACTCTGCCCGGTTATTGTTGATTCTAATCGTACACTCTTTGATTCTGGTTTGGACCCAATTCTCTGCACCAAGACTTCAGATTTTACTTCTTCAACGGCGTACACCGTGTTAGATAATAATTATTTGGTTTTGACATGGTCGAAACCCAATTGTAGCAAGTGTGAAAAAGAAGGCAAGATGTGTGATCTTAACTGTTGA 624 0.4022 MVTCSNILVVTILILVSNFNIGIWLVNGCSGRDFRCGPDGPRIRFPFRLKDKETEQSCGYNGFDLTCSDTNKTQIEFPSPSGAIILQVMKIIYPDNLLYVTDPENCLPSQFVKLLRSPISPFQFSESPGFRYNFTILHCSSSLCPVIVDSNRTLFDSGLDPILCTKTSDFTSSTAYTVLDNNYLVLTWSKPNCSKCEKEGKMCDLNC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19754g00001 207 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 14 205 IPR046948 -
Trme19754g00001 207 Pfam Wall-associated receptor kinase galacturonan-binding 29 102 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19754g00001 Trme-Chr19754 701 1324 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19754g00001 36 203 C3H Transcription Factor Family AT2G46495 28.218 1.13e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19754g00001 - - ahf:112783872 138.658