Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme197404g00001 ATGGAAGTTCTCAAGATCTACCAAATAGTCTACCAAGCTTGTCCTTACATCAAATTTGCACATTTCACAGCTAACCAGGCGATTTTCGAAGCATTTGAGGCCGAAGAACGTGTCCATGTTATTGACCTAGATATTCTCCAGGGCTACCAATGGCCTGCGTTTATGCAGGCATTGGCTGCACGGTCCGGCGGTGCTCCGTTCCTCCGGATCACCGGTGTAGGGCCGTGCATTGAATCGGTTAGGGAAACTGGACGATGTTTAACCGAGTTAGCTCATTCTCTTCGCATCCCCTTCGAGTTCCACCCTGTTGGAGAACAGCTTGAGGATCTAAAACCGCACATGTTTAACCGTCGTGTAGGCGAGGCATTA 369 0.4932 MEVLKIYQIVYQACPYIKFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARSGGAPFLRITGVGPCIESVRETGRCLTELAHSLRIPFEFHPVGEQLEDLKPHMFNRRVGEAL 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme197404g00001 123 ProSiteProfiles GRAS family profile. 1 123 IPR005202 -
Trme197404g00001 123 Pfam GRAS domain family 2 123 IPR005202 -
Trme197404g00001 123 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 3 122 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme197404g00001 Trme-Chr197404 1 369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme197404g00001 1 123 GRAS Transcription Factor Family AT3G54220 45.528 2.52e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme197404g00001 GRAS 1.6e-45 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme197404g00001 - - rcu:8285306 243.047