Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19738g00001 ATATACTCGGCTTGGATATGCCCCTTTGAGTTTGCCTTTCTGACTTATAAGGAAGATGGACTATTCATCATAGACAACATTGTCAATGGCTTCTTCGCCATCGACATAGTGCTTACATTCTTCGTTGCATACCAAGATAGCGATTCTTATCTTCTCATTGATGATCCAAAGAAAATTGCTATCAGGTACATATCCACCTGGTTTGCTTTGGATATTTGCTCAACAGCCCCACTTGAGTCCATTAGCCTCCTCTTCATTAATCATAACAGTGAGCTTGGTTTCAAACTTCTTAACATGTTGCGACTATGGCGTCTTAACCGAGTCAGTTCTCTGTTTGCAAGACTCGAAAAGGACATTCGCTTCAATTATTTCTGGGTTAGATGCACAAAGCTCTTTGCTGTAACCTTGTTTGCAGTACACTGTGCAGGATGCTTTAACTATCTAATTGCAGATGTGTATCCTGATTCCAGAAAAACTTGGATAGGTGCTATGTACCCAAATTTTAAAGAAGAAAGTCTTTGGGACAGATATGTAACTGCAATATACTGGTCCATCGTCACGCTTACTACAACCGGTTACGGAGATTTACATGCAGAGAACACCATAGAGATGCTGTTTGATATCACTTACATGCTGTTCAACTTGGGTTTAACATCATACATCATTGGAAACATGACTAACCTTGTAGTTCACTGGACGAGCCGCACCCAAGATTTT 717 0.4031 IYSAWICPFEFAFLTYKEDGLFIIDNIVNGFFAIDIVLTFFVAYQDSDSYLLIDDPKKIAIRYISTWFALDICSTAPLESISLLFINHNSELGFKLLNMLRLWRLNRVSSLFARLEKDIRFNYFWVRCTKLFAVTLFAVHCAGCFNYLIADVYPDSRKTWIGAMYPNFKEESLWDRYVTAIYWSIVTLTTTGYGDLHAENTIEMLFDITYMLFNLGLTSYIIGNMTNLVVHWTSRTQDF 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19738g00001 239 Gene3D - 2 230 - -
Trme19738g00001 239 SUPERFAMILY Voltage-gated potassium channels 1 229 - -
Trme19738g00001 239 FunFam Potassium channel KAT3 1 231 - -
Trme19738g00001 239 Pfam Ion transport protein 1 237 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trme19738g00001 239 PRINTS EAG/ELK/ERG potassium channel family signature 203 214 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trme19738g00001 239 PRINTS EAG/ELK/ERG potassium channel family signature 36 45 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trme19738g00001 239 PRINTS EAG/ELK/ERG potassium channel family signature 25 35 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trme19738g00001 239 PRINTS EAG/ELK/ERG potassium channel family signature 2 9 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trme19738g00001 239 PRINTS EAG/ELK/ERG potassium channel family signature 177 194 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trme19738g00001 239 PRINTS EAG/ELK/ERG potassium channel family signature 221 230 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trme19738g00001 239 PANTHER POTASSIUM CHANNEL AKT1 1 239 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19738g00001 Trme-Chr19738 60 1054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19738g00001 1 239 Ion Channels AT5G46240 80.335 3.04e-144 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19738g00001 K21867 - gmx:100783528 435.261