Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme197389g00001 ATGTCTCCGGAATATGCAATGCGTGGACAGTTCTCAGTGAAATCAGATGTGTTTAGCTTCGGTGTCTTAGTTTTGGAAATTGTGAGTGGCAAGAAGAATACCGATTTAAATCATTGGAATAATGCTGATGACCTCTTAAGCTAT 144 0.3889 MSPEYAMRGQFSVKSDVFSFGVLVLEIVSGKKNTDLNHWNNADDLLSY 48
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme197389g00001 48 ProSiteProfiles Protein kinase domain profile. 1 48 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme197389g00001 48 SUPERFAMILY Protein kinase-like (PK-like) 1 35 IPR011009 -
Trme197389g00001 48 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 36 - -
Trme197389g00001 48 Pfam Protein tyrosine and serine/threonine kinase 1 33 IPR001245 GO:0004672|GO:0006468
Trme197389g00001 48 Gene3D Transferase(Phosphotransferase) domain 1 1 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme197389g00001 Trme-Chr197389 130 273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme197389g00001 1 48 Receptor kinase-like Gene Family AT4G23150 66.667 2.15e-17 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme197389g00001 PK_Tyr_Ser-Thr 8e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme197389g00001 - - cam:101512516 91.2781