Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19710g00001 AAGTCTAGGGGTAGGAGATCTCTGGACAAGTCCCAAATACCGAACGTGTCAAAAGATATCAATGTTGACAAGGTTGCGGTGCAGAATTCTCATGTTCAACATGGAAATACGTTTGTTCCTGATGATAATAATTCAGACAAGATATCGATTCATATGAGGACGAGCAAACTCAGTGATCCTGATAGTGCAAGTCATTGCAGTTCAGTTTATCATCACGAGAGAGGATTAAGTGCGCTTTCATGGGAAGAAGGGAGCTCTGGGAATTATAAGAAGCAGTCTACATTGTCATATGGAGGAGGGCCAATGGCTTCTCCCTCTCCTTTGATTGGTTTGCCGGAATTTTCTCATCTTGGTTGGGGCCACTGGTTTACACTTAGAGATCTTGAACAAGCAACCAATTGTTTCTCGGCTGAGAACGTTCTCGGTGAGGGTGGATATGGAGTTGTTTACAAGGGAAGACTGATCAACGGAACCGAGGTTGCAGTGAAGAAACTTCTTAACAACTTGGGACAAGCAGAGAGAGAATTCAGGGTTGAAGTGGAGGCTATAGGCCATGTTAGACATAAGCATCTCGTGCGCCTGCTTGGATATTGCGTAGAAGGAGTTCACAGGCTGCTGGTGTACGAATATGTGAACAATGGTAACTTAGAACAATGGTTACATGGGGACAAGTACCGACTTGGGACACTTACCTGGGAGGCCCGCATGAAAGTTATACTCGGCACAGCCAAAGCGTAA 738 0.4512 KSRGRRSLDKSQIPNVSKDINVDKVAVQNSHVQHGNTFVPDDNNSDKISIHMRTSKLSDPDSASHCSSVYHHERGLSALSWEEGSSGNYKKQSTLSYGGGPMASPSPLIGLPEFSHLGWGHWFTLRDLEQATNCFSAENVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEREFRVEVEAIGHVRHKHLVRLLGYCVEGVHRLLVYEYVNNGNLEQWLHGDKYRLGTLTWEARMKVILGTAKA 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19710g00001 245 Pfam Protein tyrosine and serine/threonine kinase 137 239 IPR001245 GO:0004672|GO:0006468
Trme19710g00001 245 ProSiteProfiles Protein kinase domain profile. 135 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19710g00001 245 SUPERFAMILY Protein kinase-like (PK-like) 115 245 IPR011009 -
Trme19710g00001 245 FunFam Putative receptor-like protein kinase 117 210 - -
Trme19710g00001 245 PANTHER OS01G0323000 PROTEIN 6 245 - -
Trme19710g00001 245 Gene3D Phosphorylase Kinase; domain 1 117 210 - -
Trme19710g00001 245 ProSitePatterns Protein kinases ATP-binding region signature. 141 164 IPR017441 GO:0005524
Trme19710g00001 245 Coils Coil 155 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19710g00001 Trme-Chr19710 146 1288 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19710g00001 110 244 Trihelix Transcription Factor Family AT1G23540 48.529 7.60e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trme19710g00001 PK_Tyr_Ser-Thr 1.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19710g00001 - - gmx:100798916 398.282