Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19690g00001 GACGCTCCTGAAGAAGCTGTTGTTTCAGTCTGTGGTCATGTTTTCTGTAACCAGTGCATTTGTGAACATCTAACTGGTGAGGACAATCAGTGTCCTGCTACAAACTGCAAAACTCGACTTAGCATGTCTTCAGTGTTCCCCAAAGCTACGCTGAACAGTTCTTTATCTAATCAGGCCTGTGATCATTTGCCTGGTTACTCTGGTTCTGTGGTTGAGGATTCTGAACCTTGTTCTCAGACTCAACCGTACGATTCTTCAAAAATAAAAGCTGCACTTGAGGTTTTGCAGTCATTGTCTAAGCCACAAGGCCATAATTCCCCCAAAAAATCTGTGCAGAGCACTTCTAGGGAAAGTACTGATTGCAGCTCCACTTCTGCCGATAATGGAAAATCATTTAGTGATGTTCCCGAGAAGAAAAGCTCTAATGATTCAGTTGGTTCTCCAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGGGGATGCTAGATTTACTTGAAGCGTGTCTTAAGAATTCTAAAATTCAGTATAGAAGACTTGATGGAACAATGTCTGTCATGTCAAGAGATAAAGCTGTTAAAGATTTTAACACACTACCTGAGGTATCAGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAATATGGTGGCAGCTTGCCACGTTCTCATGTTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCCATAGACAGAGCGCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTGACTGTCAAAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAGATGTATGAATCTTTTGATATGGTAGGTTTTTGA 846 0.4196 DAPEEAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLSMSSVFPKATLNSSLSNQACDHLPGYSGSVVEDSEPCSQTQPYDSSKIKAALEVLQSLSKPQGHNSPKKSVQSTSRESTDCSSTSADNGKSFSDVPEKKSSNDSVGSPGEKAIVFSQWTGMLDLLEACLKNSKIQYRRLDGTMSVMSRDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQMYESFDMVGF 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19690g00001 281 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 79 272 IPR027417 -
Trme19690g00001 281 CDD SF2_C_SNF 147 256 - -
Trme19690g00001 281 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 137 281 IPR001650 -
Trme19690g00001 281 ProSitePatterns Zinc finger RING-type signature. 11 20 IPR017907 -
Trme19690g00001 281 Pfam Helicase conserved C-terminal domain 148 246 IPR001650 -
Trme19690g00001 281 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 271 - -
Trme19690g00001 281 MobiDBLite consensus disorder prediction 97 147 - -
Trme19690g00001 281 SUPERFAMILY RING/U-box 4 53 - -
Trme19690g00001 281 Gene3D - 49 279 IPR027417 -
Trme19690g00001 281 MobiDBLite consensus disorder prediction 98 131 - -
Trme19690g00001 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 48 IPR013083 -
Trme19690g00001 281 SMART helicmild6 163 246 IPR001650 -
Trme19690g00001 281 Pfam Zinc finger, C3HC4 type (RING finger) 4 32 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19690g00001 Trme-Chr19690 174 1323 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19690g00001 1 271 RAD5 or RAD16-like Gene Family AT1G61140 64.469 7.33e-106 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19690g00001 - - gmx:100805307 432.565