Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19665g00001 ACTGCCATAGAAGACAAGCTTCAAGATGGAGTACCAGCCTGCATAGATACTCTTCAAAGAGCTGGCATAAAAATTTGGGTGCTTACAGGGGACAAGATTGAAACAGCAATCAATATTGCCTATGCTTGCAATTTAATAAACAATGAAATGAAGCAATTCATTATCAGTTCAGAAACCGATGCCATTAGAGAAGTTGAAGAAAGGGGGGACCAAGTAGAAATTGCGCGATTTATTAGAGAAGAAGTTAAGAAAGAGCTGACGAAGTGCCTTGAGGAAGTACGAAGCTATTTTAGTTCTCCACCTGCACCAAATTTAGCACTTGTAATTGATGGAAAATGTCTAATGTATGCACTGGATCCAAGTTTGAGAGTCATTCTACTGAATTTGAGTTTGAATTGCCATTCTGTTGTTTGCTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTCACAGCTTTGGTCAAGAATGGTGCACGGAAAATAACACTTGGTATTGGTGATGGAGCCAATGATGTTAGCATGATTCAAGCTGCTCATGTTGGTGTTGGAATAAGTGGGATGGAGGGGATGCAAGCCGTAATGGCTAGTGATTTTGCAATTGCACAATTTCGTTACCTTGTAGATTTACTTCTTGTTCATGGTCGGTGGTCATATCTTCGAATATGCCAGGTGGTGACATACTTCTTTTACAAGAATCTCACTTTCACTCTTACTCAGTTTTGGTTTAACTTCCAAACTGGGTTTTCAGGCCAGAGATTCTATGATGATTGGTTTCAGTCATTGTATAATGTTATATTCACTGCGCTTCCTGTGATCATGGTTGG 821 0.4007 TAIEDKLQDGVPACIDTLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFIISSETDAIREVEERGDQVEIARFIREEVKKELTKCLEEVRSYFSSPPAPNLALVIDGKCLMYALDPSLRVILLNLSLNCHSVVCCRVSPLQKAQVTALVKNGARKITLGIGDGANDVSMIQAAHVGVGISGMEGMQAVMASDFAIAQFRYLVDLLLVHGRWSYLRICQVVTYFFYKNLTFTLTQFWFNFQTGFSGQRFYDDWFQSLYNVIFTALPVIMVG 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19665g00001 274 Gene3D - 1 204 IPR023214 -
Trme19665g00001 274 Pfam Phospholipid-translocating P-type ATPase C-terminal 192 274 IPR032630 -
Trme19665g00001 274 SUPERFAMILY HAD-like 2 211 IPR036412 -
Trme19665g00001 274 SUPERFAMILY Calcium ATPase, transmembrane domain M 151 272 IPR023298 -
Trme19665g00001 274 FunFam Phospholipid-transporting ATPase 1 204 - -
Trme19665g00001 274 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 274 - -
Trme19665g00001 274 NCBIfam HAD-IC family P-type ATPase 137 243 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme19665g00001 274 NCBIfam phospholipid-translocating P-type ATPase 1 274 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19665g00001 Trme-Chr19665 1 1296 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19665g00001 1 274 Primary Pumps ATPases AT1G59820 84.307 3.39e-166 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19665g00001 K14802 - gmx:100815547 499.59