Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme196580g00001 AACGGCGGTGCATTCTCCGTACCTAGCAAATGCGCCAAATTGATCTTCCCACCGCTTGATTTGGAAGCCAAATTGCCAACTCAGGAACTCTCCATCACCGATGTTCACGGCAATGTCTGGGAGTTTCGCCATGTCTACCGTGGGAATCCAAAGAGACACATGTTCACCCATAACTGGAGTCAATTCGTTGACAAGAAGAAACTCGTAGGTGGTGATTCCCTTGTTTTTATGAAAAATTCGGCCGGAGAGATCTATGTTGGAATTCGTCGGGTCAAAAAGTTTGCTACCCCCGCTGTATTGCAAAAGAATGAATTGGTGGTTATAGAGGCAGTGAAATTGGCGGATAACAACGAGGCGTTTGAAGTTGTGTACTATCCGACCATCGGTGATGGTGATAATTTTGTAGTGGATGCTAATGTTGTGGAGGATGCAATGAAGATTAATTGG 447 0.4519 NGGAFSVPSKCAKLIFPPLDLEAKLPTQELSITDVHGNVWEFRHVYRGNPKRHMFTHNWSQFVDKKKLVGGDSLVFMKNSAGEIYVGIRRVKKFATPAVLQKNELVVIEAVKLADNNEAFEVVYYPTIGDGDNFVVDANVVEDAMKINW 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme196580g00001 149 SUPERFAMILY DNA-binding pseudobarrel domain 3 92 IPR015300 -
Trme196580g00001 149 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 149 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trme196580g00001 149 Pfam B3 DNA binding domain 3 91 IPR003340 GO:0003677
Trme196580g00001 149 CDD B3_DNA 1 90 IPR003340 GO:0003677
Trme196580g00001 149 Gene3D - 1 92 IPR015300 -
Trme196580g00001 149 SMART B3_2 5 92 IPR003340 GO:0003677
Trme196580g00001 149 ProSiteProfiles B3 DNA-binding domain profile. 1 92 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme196580g00001 Trme-Chr196580 1 447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme196580g00001 1 149 B3 DNA Binding Superfamily AT4G30080 40.426 4.83e-39 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trme196580g00001 B3 1.6e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme196580g00001 - - mtr:11413246 199.519