Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme196514g00001 ATGTCCCATGTTAAACTACAAGAGCTATTAAAATTTGATTTTGAAATGCTTGCAACTGCCACAAACAACTTCCACTTATCCAACAAACTTGGACAGGGTGGTTTTGGTCCCGTATACAAGGGGAAACTGCAAGATGGGCGGGAAATAGCAGTTAAAAGACTTTCTAGAGCATCTGGACAAGGGCTGGAGGAATTCATGAATGAAGTAGTTGTTCTTTGTAAGCTACAACACCGCAATCTT 240 0.4083 MSHVKLQELLKFDFEMLATATNNFHLSNKLGQGGFGPVYKGKLQDGREIAVKRLSRASGQGLEEFMNEVVVLCKLQHRNL 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme196514g00001 80 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Trme196514g00001 80 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 80 - -
Trme196514g00001 80 ProSiteProfiles Protein kinase domain profile. 24 80 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme196514g00001 80 SUPERFAMILY Protein kinase-like (PK-like) 7 80 IPR011009 -
Trme196514g00001 80 Pfam Protein tyrosine and serine/threonine kinase 25 80 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme196514g00001 Trme-Chr196514 10 325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme196514g00001 7 80 Receptor kinase-like Gene Family AT4G04500 67.568 7.96e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trme196514g00001 PK_Tyr_Ser-Thr 1e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme196514g00001 - - mtr:25498365 152.14