LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme19634g00001	ATGAGTGTAGTAGGGTTTGATATTGGAAATGAGAATTGTGTAATTGCTGTAGTGAAGCAAGGTGGGGTTGATGTTTTGTTGAATGGTGAATCGAACCGCGAAACCCCTGCAATCGTTTGCTTCGGAGAGAAGCAACGGTTTTTTGGGTCTGCTGGTGCTGCTTCTGCTATGATGCACCCGAAATCGACAGTATCTCAAGTCAAGAGACTAATAGGAAGGAGATTTGATGACCCTGATATTCAAAATGACCTAAAAATGCTCACTGTTGAAACTTTGGAAGGTTCAGAGGGCGGCATTTTGATTCACTTGGAATACTTAAAGGAGGATCATAAGTTTATGCCGGTTCAAATATTAGCAATGCTCTTTGCTCATTTGAAGACTATAGCTGAAAATGATCTGGGGACCACTGTTTCGGATTGTGTTATCGGAGTTCCATTATACTTTACTGACTTGCAGAGACGAGAATATCTCGACGCAGCAACAATTGTTGGGTTGAATCCTTTGAAGTTGATTCATGATTGCACTGCAATAGGTCTTGGTTATGGTGTTTACAAAACAGATTTTCCTGATGGAGATCCTATTTATGTTGCCTTTATTGACATAGGCCACTGCGATACTCAGGTCGCTATTGCAGAATTTCAGGCCGCGAAAATGAAAATTCTTTCACATACTTTCGATAGTAGCTTAGGGGGTAGAGACTTTGATGAGGTTCTATTTAGACATTTCGCAGAAACATTTAAGGAACAGTACGACATTGATGTGTATTCTAACGACAGAGCTTGTAATAGGCTGCGTGCGGCGTGTGAGAAGTTGAAGAAAGTTTTGAGTGCAAATTTAGAGGCACCTCTTAACATCGAGTGTTTGATGGATGAAAAAGATGTTAGTGGATTTATCAAGAGGGAAGAATTCGAGAATTTGGCTTCAGGGTTATTGGAGAGAATTTCTATTCCTTGCAATAGAGCATTGGCTGACGCGGGCTTGAGCGTTGATAAGATTGATTCTGTCGAGTTAGTTGGTTCAGGTTCAAGAATTCCAGCTATAACTAGATTATTAACCTCTCTATTTGAGAAAGAACTCAGTCGAACACTGAATGCAAGCGAGTGTGTAGCTCGCGGTTGTGCTCTTCAATGTGCAATGCTCAATCCTGTTTCCCGTGTCAAAGAATACGAG	1170	0.4111	MSVVGFDIGNENCVIAVVKQGGVDVLLNGESNRETPAIVCFGEKQRFFGSAGAASAMMHPKSTVSQVKRLIGRRFDDPDIQNDLKMLTVETLEGSEGGILIHLEYLKEDHKFMPVQILAMLFAHLKTIAENDLGTTVSDCVIGVPLYFTDLQRREYLDAATIVGLNPLKLIHDCTAIGLGYGVYKTDFPDGDPIYVAFIDIGHCDTQVAIAEFQAAKMKILSHTFDSSLGGRDFDEVLFRHFAETFKEQYDIDVYSNDRACNRLRAACEKLKKVLSANLEAPLNIECLMDEKDVSGFIKREEFENLASGLLERISIPCNRALADAGLSVDKIDSVELVGSGSRIPAITRLLTSLFEKELSRTLNASECVARGCALQCAMLNPVSRVKEYE	390

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme19634g00001	390	FunFam	Heat shock 70 kDa protein 4	230	313	-	-
	Trme19634g00001	390	Gene3D	-	186	360	-	-
	Trme19634g00001	390	FunFam	Heat shock 70 kDa protein 4	38	113	-	-
	Trme19634g00001	390	CDD	HSPA4_like_NDB	2	380	-	-
	Trme19634g00001	390	Gene3D	-	38	113	-	-
	Trme19634g00001	390	FunFam	Heat shock 70 kDa protein 4	114	191	-	-
	Trme19634g00001	390	Pfam	Hsp70 protein	3	388	IPR013126	GO:0005524\|GO:0140662
	Trme19634g00001	390	PANTHER	HSC70CB, ISOFORM G-RELATED	1	390	-	-
	Trme19634g00001	390	SUPERFAMILY	Actin-like ATPase domain	195	380	IPR043129	-
	Trme19634g00001	390	Gene3D	-	5	374	-	-
	Trme19634g00001	390	FunFam	Heat shock 70 kDa protein 4	1	73	-	-
	Trme19634g00001	390	SUPERFAMILY	Actin-like ATPase domain	1	185	IPR043129	-
	Trme19634g00001	390	PRINTS	70kDa heat shock protein signature	140	160	-	-
	Trme19634g00001	390	PRINTS	70kDa heat shock protein signature	332	348	-	-
	Trme19634g00001	390	PRINTS	70kDa heat shock protein signature	2	15	-	-
	Trme19634g00001	390	PRINTS	70kDa heat shock protein signature	363	383	-	-
	Trme19634g00001	390	PRINTS	70kDa heat shock protein signature	30	42	-	-
	Trme19634g00001	390	Gene3D	Actin; Chain A, domain 4	230	313	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme19634g00001	Trme-Chr19634	63	1232	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme19634g00001	4	381	Calmodulin-binding Proteins	AT3G09440	35.092	1.44e-74	242

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme19634g00001	K09489		-	gmx:100795914	632.869