Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme196323g00001 TTGTGTGATTTCGGATTAGCAACATGGACTTCTGCACCTTCAGTTCCTTTCCTTTGCAAAACTGTTAAAGGAACATTTGGATATTTGGCTCCAGAGTATTTCCAACATGGGAAAATATCCGATAAGACTGATGTTTACGCTTTTGGAGTGGTTTTATTGGAACTGATTACTGGCCGGAAACCAATTGAACCAAAAAGGTCTCCAGGAGAGGAGAATTTAGTCTTATGG 228 0.3991 MCDFGLATWTSAPSVPFLCKTVKGTFGYLAPEYFQHGKISDKTDVYAFGVVLLELITGRKPIEPKRSPGEENLVLW 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme196323g00001 76 SUPERFAMILY Protein kinase-like (PK-like) 2 65 IPR011009 -
Trme196323g00001 76 Pfam Protein kinase domain 1 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme196323g00001 76 Gene3D Transferase(Phosphotransferase) domain 1 1 76 - -
Trme196323g00001 76 ProSiteProfiles Protein kinase domain profile. 1 76 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme196323g00001 76 PANTHER OS08G0249100 PROTEIN 1 76 IPR046958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme196323g00001 Trme-Chr196323 15 357 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme196323g00001 1 76 Trihelix Transcription Factor Family AT1G70460 55.263 7.64e-23 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trme196323g00001 Pkinase 9.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme196323g00001 - - psat:127083811 158.688