Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19629g00001 ATGAAATACTTTTCCAGGTTGCAGAATACATTTTCTGCTAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCGTTGTTGAGAGCAATCCATGATATTGATGCGAAGTTTTCTGAGGAAGCCTCTAGAAATAACCTTCATTCAGGATCTACAGCAACAATTGTATTGGTTGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCTTTCATTTGCTCTGAAAGTTTTCAGTCTCCTGAGGAGGCTAAAGCCTCTTTGTTAAAGCTGTATAGGCAGACAGAGCGTGATGGTTCTGTTTCTGTGTGGAATCGTGAAAAGTACAGATTAGCATCTTCCAATGGGTTCACTCATTTTGCAGTGAAGGAATTGACTAGCGATCATCATCCAGACAGAGAGGATGAAAAAACTCGGGTGGAAGCTGCTGGTGGTCAAGTTCTAAATTGGGGTGGTTTGCCTCGCGTAAATGGTCAGTTGGCTATTACACGGGCTATTGGTGATGTGTTCTTTAAAAGTTATGGAGTTATATCTGTACCAGAAGTGACTGATTGGCAGCCTCTAACTGCTAATGATAGCTACTTGGTGGCTGCATCTGATGGAGTCTTTGAGAAGTTGAGTGTGCAAGATGTCTGTGATTTGTTGTGGGAAGTACACCGTTTTAGTGACATGAGATCAGAGTGCACCTCTTCATCTTCCTATTCATTAGCAGATTTTATTATTAATACTGC 740 0.4041 MKYFSRLQNTFSANFDDSFHLEILKEALLRAIHDIDAKFSEEASRNNLHSGSTATIVLVADDKILVANIGDSKAFICSESFQSPEEAKASLLKLYRQTERDGSVSVWNREKYRLASSNGFTHFAVKELTSDHHPDREDEKTRVEAAGGQVLNWGGLPRVNGQLAITRAIGDVFFKSYGVISVPEVTDWQPLTANDSYLVAASDGVFEKLSVQDVCDLLWEVHRFSDMRSECTSSSSYSLADFIINTA 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19629g00001 247 SMART PP2C_4 1 243 IPR001932 -
Trme19629g00001 247 Pfam Protein phosphatase 2C 23 79 IPR001932 -
Trme19629g00001 247 Pfam Protein phosphatase 2C 122 217 IPR001932 -
Trme19629g00001 247 Gene3D - 2 247 IPR036457 -
Trme19629g00001 247 PANTHER PROTEIN PHOSPHATASE 21 222 IPR015655 GO:0004722|GO:0006470
Trme19629g00001 247 ProSiteProfiles PPM-type phosphatase domain profile. 1 247 IPR001932 -
Trme19629g00001 247 CDD PP2Cc 4 226 IPR001932 -
Trme19629g00001 247 SUPERFAMILY PP2C-like 14 221 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19629g00001 Trme-Chr19629 1 1345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19629g00001 6 247 PP2C-type Phosphatase Gene Family AT3G63320 59.091 9.69e-101 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19629g00001 - - tpra:123885970 436.032