Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19598g00001 GAGGATCGTGTGATTGAGAAAAACTCTGAAGATATTGGAAATCATGGCTCAAACAGGACTTCTGGTGGTCAGAATCATCAGAAGCAATCCGATAGTGAAGACAACTCAGGGCAATCTTCAGGGCAAAACTGGAGACACCCAAATGTAAATATTTCTTCCACTTGCTTGGATACCACATCGACTCATGTTTCTGGGACAATAACATCACCTCTTAAGCTGGGATTTGATTTGCACCAACCCCCTTCTCCTCCAGCATGTAATGCAACTACATGGCAGGCTATTATTGGTGAACCAGATGATTTTGATGAATCAGTTTCAGATCTTTTGGCAGAGGTGGAGGCAATGGAGTCACTTGGTGGCTTGGAATCTCCCACTTCAATCATGAAACGTAGCGAGGAATTGACTGATGGTTCTAAAAATCTTTGTCTCAGTTTTCCAGAGCTCAGCCCAATGCTTGATGCAGGTAAAGGTGATGCATTGAGCTCCACCGGTGATTTACAGTTACTATCTCAATCCACAGCAGCAGAGGAACCATTACAGCAAGCAGATGTCCCACATCATCAAAGAATATCAGTGGAGCTTTCCTCAAGAAATTCTAAAGTTGATGTGGGTTCAAAGGACATATGTGTTTCGAGTAATCAATGGGAGTCGGGCTCGGAAAATTCTCATATTTTTCCATCCACTGCAACATTGAGCATGACTGTAGACACCACTTGGAGACTTGGATTGGAGAGTACACACCTGGAATGGGGAGGAATGGATCAACGAAATGCAAACGCGAATTGGGGAGGACAGACGGCAGTAAATGAGAACAGAAGCTCAAATTCACGCACTTCTGTAGTAACTCCAAGCTTTGGGGATAGCCAAACAAGATATGGAAATGATCGGTTTTCTGTGCCCAGAGATCGGGGTTTTCCTGGTCATGGTAGGGAACCTGGTTTAGTTAGAGGTAGAGCTCCGTGGAACAGGCAACCAGTATTTGGTGTTGGTAATGGAGGCTCATATAGACCTCCGCCCAGAGGGCAGCGAGTTTGTAAATTTTATGAAAGTGGGTACTGTAAGAAAGGGGCATCCTGTGATTACTTCCACCCATGA 1095 0.4475 EDRVIEKNSEDIGNHGSNRTSGGQNHQKQSDSEDNSGQSSGQNWRHPNVNISSTCLDTTSTHVSGTITSPLKLGFDLHQPPSPPACNATTWQAIIGEPDDFDESVSDLLAEVEAMESLGGLESPTSIMKRSEELTDGSKNLCLSFPELSPMLDAGKGDALSSTGDLQLLSQSTAAEEPLQQADVPHHQRISVELSSRNSKVDVGSKDICVSSNQWESGSENSHIFPSTATLSMTVDTTWRLGLESTHLEWGGMDQRNANANWGGQTAVNENRSSNSRTSVVTPSFGDSQTRYGNDRFSVPRDRGFPGHGREPGLVRGRAPWNRQPVFGVGNGGSYRPPPRGQRVCKFYESGYCKKGASCDYFHP 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19598g00001 364 ProSiteProfiles Zinc finger C3H1-type profile. 339 364 IPR000571 GO:0046872
Trme19598g00001 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 85 364 - -
Trme19598g00001 364 MobiDBLite consensus disorder prediction 265 319 - -
Trme19598g00001 364 MobiDBLite consensus disorder prediction 1 61 - -
Trme19598g00001 364 SUPERFAMILY CCCH zinc finger 339 363 IPR036855 GO:0046872
Trme19598g00001 364 MobiDBLite consensus disorder prediction 14 61 - -
Trme19598g00001 364 MobiDBLite consensus disorder prediction 265 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19598g00001 Trme-Chr19598 58 1152 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trme19598g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19598g00001 - - aprc:113869503 575.089