Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1958g00001 ATGAGGTTAGATAGGGAAGACACGCCTGGAATAGAGACTACGCCTGTTTTGTTGATGCTCGACTCAAATACAGAAGCCAAACAATCTGAAAAAATTAAATCAGAATTGATTCCTAATGTATTGAAATATTTAGATTCTAGTGATATGGAAGAGACTGAAAACGTTATTGCAAGGACAAAGTTGACAGATTTGCTTATTCATGAGGACGATGAAGCATTACAAAACTGGCGTGCTAAGGAGATAAGTAGAAGAAAAGAAGTTGAAAAACAATTGGCAAGGAAAAAGCAAGACGTACTAGAAATGAAGAATCAGCGAGATAAAATAATATGTGAATTGCAAATGGTCCGAGACCAAAGTTCAGCTCTTAGAAACCAATTGTTTGAGTCCAATTGTACGGCAACTGAGTTGGAAGAGAAGTTTCTATCTGCTGTGGACCTTTTGATAAGTTTCAAGGAAAAACGAGATAAGCTAAGGATAGAACATGCAAATGCAGTTAGGAAAGTCAAAGTGCTGACAAAAATTGGAGAAGCGGATACTACATCCTCTTATGTGGTAGAATTCCCTACATTTTCTTTCATGGAGATCAATGAGGCAACTCATGATTTTGACCAATCTTGGAAAATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGCAACATGCTTGTTGCCATAAAAATGCTACCCTCTTATGGTTGCCAGAGCCAATTGGAGTTCCAGCATCAG 735 0.3837 MRLDREDTPGIETTPVLLMLDSNTEAKQSEKIKSELIPNVLKYLDSSDMEETENVIARTKLTDLLIHEDDEALQNWRAKEISRRKEVEKQLARKKQDVLEMKNQRDKIICELQMVRDQSSALRNQLFESNCTATELEEKFLSAVDLLISFKEKRDKLRIEHANAVRKVKVLTKIGEADTTSSYVVEFPTFSFMEINEATHDFDQSWKIGEGRYGSVYKGLLRNMLVAIKMLPSYGCQSQLEFQHQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1958g00001 245 PANTHER OS02G0152300 PROTEIN 47 244 - -
Trme1958g00001 245 SUPERFAMILY Protein kinase-like (PK-like) 179 236 IPR011009 -
Trme1958g00001 245 ProSitePatterns Protein kinases ATP-binding region signature. 208 229 IPR017441 GO:0005524
Trme1958g00001 245 Coils Coil 77 104 - -
Trme1958g00001 245 Gene3D Phosphorylase Kinase; domain 1 171 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1958g00001 Trme-Chr1958 188 2325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1958g00001 104 243 U-box Gene Family AT3G49060 47.857 1.74e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1958g00001 - - gmx:100799675 317.39