Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19588g00001 ATATCAGCTAGATGGGATCCAACTGAAGCATGTCGGCCAATAATGGACGAAGCACCTGTGTTTCATCCGACTATTGAAGAGTTTGAAGATACACTGAGTTATATAGCAAAGATACGGCCGCTAGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGTTGGGTTCCACCTTGCCTTCTTAAGGAGAAAGATATATGGGAAAATGCTGAATTTTCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACCTATGAAGAAAAAAAGTAGGGGAAGGAAACGGAAACGCAGAAATAGAAAGAACTCCAAAACAGGAACATGTAGGAGAGTTTCCAATTCAGCTTCTGAAGCTAAAAATGCTTCTGAAGCCGATGAGAAATATGGATTCCAATCAGGGTCGGACTTCACGTTTAAAGACTTTCAGCAATATGCTAAATACTTTAAGGAATGCTACTTTGGGTTGAAAGATGCCAACGAAGATGGAAAAGTCAGTGATAGTAACCAGGAAAAGAGACGAATGCCCTCCGAGGAGGAAATTGAAGGTGAATACTGGCGAATAGTTGAACAACCAACTGATGAAGTCGAGGTGTATTACGGAGCTGATTTAGAAACTGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCATCATCCTTAACTAAGGGTTATCCGGACCAGTATGCCCTTTCTGGTTGGAACCTAAATAACTTCCCGCGACTACCAGGTTCTGTACTAAGTTTTGAAGGAAGTGATATCTCTGGAGTACTAGTTCCATGGCT 788 0.415 ISARWDPTEACRPIMDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRNRKNSKTGTCRRVSNSASEAKNASEADEKYGFQSGSDFTFKDFQQYAKYFKECYFGLKDANEDGKVSDSNQEKRRMPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFPKASSSLTKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWL 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19588g00001 263 MobiDBLite consensus disorder prediction 90 108 - -
Trme19588g00001 263 Gene3D Cupin 3 263 - -
Trme19588g00001 263 MobiDBLite consensus disorder prediction 84 127 - -
Trme19588g00001 263 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 263 - -
Trme19588g00001 263 SMART JmjN_1 17 58 IPR003349 -
Trme19588g00001 263 Pfam jmjN domain 19 52 IPR003349 -
Trme19588g00001 263 ProSiteProfiles JmjN domain profile. 18 59 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19588g00001 Trme-Chr19588 388 1374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19588g00001 1 263 JUMONJI Transcription Factor Family AT1G30810 61.977 1.91e-95 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme19588g00001 JmjN 1.1e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19588g00001 K11446 - gmx:100801775 422.165