Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19563g00002 ATGAGTGTTGATCAATCTGCTTTAACCAGAGAATCTCTTTCGGCGACAAAGAATCCCTCAGATGAAGTGTTTTATGGTTCAACTGTTAAAAAAGGTGAGATTGAAGCAGTTACTATTGCTACTGGAGTGCACACATTTTTCGGCAAAGCTGATCAACTCGTTGACAGTACAAACCAAGTTGGTCACTTTTAG 192 0.3958 MSVDQSALTRESLSATKNPSDEVFYGSTVKKGEIEAVTIATGVHTFFGKADQLVDSTNQVGHF 63
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19563g00002 63 Gene3D - 42 55 - -
Trme19563g00002 63 Gene3D - 1 41 - -
Trme19563g00002 63 PANTHER CALCIUM-TRANSPORTING ATPASE 2 63 - -
Trme19563g00002 63 MobiDBLite consensus disorder prediction 1 22 - -
Trme19563g00002 63 Pfam E1-E2 ATPase 2 59 - -
Trme19563g00002 63 SUPERFAMILY Calcium ATPase, transduction domain A 2 53 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19563g00002 Trme-Chr19563 1157 1348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19563g00002 1 63 Primary Pumps ATPases AT5G57350 79.365 5.96e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19563g00002 K01535 - gmx:100785442 107.071