Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19563g00001 ATGCTGCAATTTTGGTCCCCAGGTGACATAACTAGCATTAAATTAGGAGATATCATTTATGCTGATGCTCGTCTCTTTGAGGGTGATGCTTTGAGTATTGATCAGTCTGCTTTAACCAGAGAATCTCTTTCGGCGACAAAGAATCCCTTAGATGAAGTGTTTTCTGGTTCAACTGTTAAGAAAGGTGAGATTGAAGCAGATGTTATTGCTACTGGAGTGCACACATTTTTCGGCAAAGCTGATCACCTTGTTGACAGTACAAACCAAGTTGGTCACTTTCAGAAAGTCCTAATAGCAATTGGCAATTTCTGCATTTGCTCAACTGGTGTTGTATGA 336 0.4018 MLQFWSPGDITSIKLGDIIYADARLFEGDALSIDQSALTRESLSATKNPLDEVFSGSTVKKGEIEADVIATGVHTFFGKADHLVDSTNQVGHFQKVLIAIGNFCICSTGVV 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19563g00001 111 Gene3D - 72 110 - -
Trme19563g00001 111 PANTHER CALCIUM-TRANSPORTING ATPASE 7 109 - -
Trme19563g00001 111 Gene3D - 7 71 - -
Trme19563g00001 111 Pfam E1-E2 ATPase 7 106 - -
Trme19563g00001 111 SUPERFAMILY Calcium ATPase, transduction domain A 7 83 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19563g00001 Trme-Chr19563 709 1044 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19563g00001 7 110 Primary Pumps ATPases AT5G57350 82.692 6.77e-52 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19563g00001 K01535 - gmx:100785442 175.637