Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19552g00001 ATGACGAAGATTCCGTTTCTCCCTCTTCGACGGACAGGCGGTAATGATGGTGGTGGTTGTGGTTCGACGATGGAGAGGGCGATTGCAAGTATGCAAGGTGTGGGAGAGTTTGGTTTAGGGAAGCATAGGAAAGGAAGTGCGGTAACTACCAAGGTTTCGAGGAGTTCGATCCCTGATAGTGTTATCAGAGAGGATCCTACCACCAAGTATGAAATACTCTATGAACTTGGGAAGGGTTCTTATGGTGCTGTGTACAAAGCCAGGGATTATAGAACCTCTGAGATGTTTGCTATCAAAGTCATATCATTATCTGAAGGAGTGAGAGAAATTCGTGGTGAGATTGAGATGTTACAACAGGGTAATCATCCTAACTTTATCTTGGAAGCTAACAAGGAGAAGAGTATCTTTGGGTAA 414 0.442 MTKIPFLPLRRTGGNDGGGCGSTMERAIASMQGVGEFGLGKHRKGSAVTTKVSRSSIPDSVIREDPTTKYEILYELGKGSYGAVYKARDYRTSEMFAIKVISLSEGVREIRGEIEMLQQGNHPNFILEANKEKSIFG 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19552g00001 137 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Trme19552g00001 137 Gene3D Phosphorylase Kinase; domain 1 59 129 - -
Trme19552g00001 137 Pfam Protein kinase domain 70 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme19552g00001 137 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 53 125 - -
Trme19552g00001 137 SUPERFAMILY Protein kinase-like (PK-like) 52 126 IPR011009 -
Trme19552g00001 137 ProSiteProfiles Protein kinase domain profile. 70 137 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme19552g00001 22 126 MAP Kinase Kinase Kinase Kinase AT1G69220 50.926 1.11e-19 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Trme19552g00001 Pkinase 7.4e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19552g00001 - - gmx:100784666 169.088