Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme195412g00001 ATGACTGGAGATGGTGTGAATGATGCTCCTGCATTGAAGAAAGCTGACATTGGAATTGCTGTCGCTGATGCCACCGATGCTGCACGAGGTGCTTCTGATATAGTCTTGACAGAACCTGGTTTGAGTGTTATCATCAGTGCAGTCTTGACAAGTAGAGCTATTTTCCAAAGAATGAAGAACTACACGATTTATGCAGTGTCTATCACTATCCGTATAGTGGTAAGTAAATAG 231 0.4242 MTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVVSK 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme195412g00001 76 PRINTS H+-transporting ATPase (proton pump) signature 33 58 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme195412g00001 76 PRINTS H+-transporting ATPase (proton pump) signature 2 18 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme195412g00001 76 SUPERFAMILY HAD-like 1 70 IPR036412 -
Trme195412g00001 76 PANTHER CALCIUM-TRANSPORTING ATPASE 1 73 - -
Trme195412g00001 76 NCBIfam HAD-IC family P-type ATPase 1 74 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trme195412g00001 76 PRINTS P-type cation-transporting ATPase superfamily signature 25 37 - -
Trme195412g00001 76 PRINTS P-type cation-transporting ATPase superfamily signature 2 21 - -
Trme195412g00001 76 Gene3D - 1 70 IPR023214 -
Trme195412g00001 76 Pfam haloacid dehalogenase-like hydrolase 3 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme195412g00001 Trme-Chr195412 101 416 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme195412g00001 1 73 Primary Pumps ATPases AT4G30190 100.000 1.58e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme195412g00001 K01535 - mnt:112091054 124.02