Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1952g00001 ATGGCACACAAGTCTCAAGAGGTGCAAGGCACCAGCARGAGCAGCACACTGGGTGATATGCTAGCATTCCCTGGTAAGAGAATGAAGGGTACACGATTTGACAGCATGACTGGTGGGGAAGGTTTCTATGATAAGTTTGCTCGCAAGGGTGAACCTTCTGAGTGGGTTGAACCACTGGGTATCAGCAGCAAGGATGGTTGGAGGGATGCAAGCATTGGAAGTTTGTCGAGGTCAAAATCTCTTCCTGCTTCTGCTACTGTCTTTGGAAATCCTAGAACATACTTGTGTGCCGAAGCACTTCGTAATGATCGATATATGGTGCCAAAGGATCTTAAAAGGGAGAGGAGAAGAGCGACAAAGACTCTTGATCATAGACATGGTATGACTTCTAGAAGCACAATATCTGGTCACAAGAAGTCTTGGTCTTTGGTTTCATTGAAGCAGGAAGTTAGCGAGTTCTCTCCAGACTTAAATGCAGTTCAAAAGAACATAAAGATCAATCTTGAAGAAGATGCATCCAATCTAGACGTTCCGACTCCTGAAGCCTTTGATCAGCCCCTTAGAGATACAAGTGCTGTTAATGATGATCTTGCGGATGCAGCAAATGAAAACTCTGAACCTTCTTCGGATAAGGTGATTCCTGGATCATCGTCTTGTGTTTTGATAAAAGGCGACAGAAGTATTGTTGACAAATCCAATCCAATGCAAGAGGATGTATCAGCTGGTTCTACTGGTGGAATTTCAGTCCTCCCTGAAGCACCTGTACCTGGACTTGAATCTCCATGCTGTAAAGATGCTGATCAGCCCAGTCCGATCTCAGTTTTAGATCCTTCTTTTACAGATGATCTGTCATCTTGCTCTGAATGTTTTGGAAGTGTCAGTGCTGACCTACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGTTGGAATCTGAAGAACATGTGGAGGGACCTATGCTAATTTCAAGTGATGAAGATGGCGGGGAAGCATCTGTTGGAATGTTAGAAGGCAATGCATTATGGAGAACCGAAGATAGCTGGGAGTCTTCCTACATTATTGATGTCTTGTCTGAATCTGCTATTATTGAGGCTCGAACTGATAATAGTTTGGAAGTTTGGCATTCTCTAGAAAGCCCTGTGAGTCTTTCTGTGTTTGAAGAACTCGAAGAGAAGTACAATGATTGGACTACTTGCTCAAAGTCTGAAAGAAGATTGCTTTTCGACCGCATCAATTCAGGAATCGTCAAGATTCATGAGCAATCTACTAACCCACAACCATGGATGGGAAATGCAGCTCTAAGTTTTGGATCAAAAAGGATTAATGGGCTTCAAGATGGTCTTTTCCAGATGCTAGGGAGCCAAGAAAAGGTAGAGGATGATGTCCTGGGTAAGTTGCTGATTGTGGAGTCTCRATGGTTGAAATTGAGAGATGACACTGATGTAATAGGCACAGAAGTTGAAAGATTGATATTAGATGATTTAGTTGCAGAAATAGTCAGTATCTAG 1506 0.4296 MAHKSQEVQGTSXSSTLGDMLAFPGKRMKGTRFDSMTGGEGFYDKFARKGEPSEWVEPLGISSKDGWRDASIGSLSRSKSLPASATVFGNPRTYLCAEALRNDRYMVPKDLKRERRRATKTLDHRHGMTSRSTISGHKKSWSLVSLKQEVSEFSPDLNAVQKNIKINLEEDASNLDVPTPEAFDQPLRDTSAVNDDLADAANENSEPSSDKVIPGSSSCVLIKGDRSIVDKSNPMQEDVSAGSTGGISVLPEAPVPGLESPCCKDADQPSPISVLDPSFTDDLSSCSECFGSVSADLQGLRMQLQLLKLESEEHVEGPMLISSDEDGGEASVGMLEGNALWRTEDSWESSYIIDVLSESAIIEARTDNSLEVWHSLESPVSLSVFEELEEKYNDWTTCSKSERRLLFDRINSGIVKIHEQSTNPQPWMGNAALSFGSKRINGLQDGLFQMLGSQEKVEDDVLGKLLIVESXWLKLRDDTDVIGTEVERLILDDLVAEIVSI 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1952g00001 501 PANTHER AFADIN 1 500 - -
Trme1952g00001 501 MobiDBLite consensus disorder prediction 232 253 - -
Trme1952g00001 501 MobiDBLite consensus disorder prediction 197 215 - -
Trme1952g00001 501 Pfam Domain of unknown function (DUF4378) 349 497 IPR025486 -
Trme1952g00001 501 MobiDBLite consensus disorder prediction 175 216 - -
Trme1952g00001 501 MobiDBLite consensus disorder prediction 1 18 - -
Trme1952g00001 501 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1952g00001 Trme-Chr1952 19 2610 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1952g00001 1 499 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 33.661 2.26e-58 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1952g00001 - - ccaj:109788117 627.091