Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme19514g00001 ATGAAAATAGCACATCAGGCTCAAGATAAGAAAGAGGGTCATGCTCAAAATAATAGAGACCCTTTTAAGACCGATGGAAATTATTTTCCAAATGAAGTGTCATCTATCACAAAAGAAACAACAGGAATTGGTGGTGCTCTTTGGGACATATTCAGAAGAGAAGATACCGAAAAGTTAGAGGCATATCTAAGAAAACACTCCAATGAATTTAGGCATATTTATTGTTCTCCGGTAAAACAGGTTGTTCACCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCATAAGAAGAAGCTAAAGGAAGAGTTTGGAGTAGAACCTTGGACATTTGAGCAAAAACTTGGTGAAGCAGTATTTATACCTGCCGGATGTCCACACCAAGTCAGAAATCTCAAGTCTTGCACAAAAGTTGCTGTAGACTTTGTGTCACCAGAAAATGTGCATATTTGCATGCTTTTAACTGATGAGTTTCGTCGTCTTCCTAAGAATCACAAGGCAAGAGAAGACAAACTTGAGCTAATTCTCTTCAACATGAAAGCTGCTGCAGTTTTGATCAACAAGTCTCACCATAG 575 0.3791 MKIAHQAQDKKEGHAQNNRDPFKTDGNYFPNEVSSITKETTGIGGALWDIFRREDTEKLEAYLRKHSNEFRHIYCSPVKQVVHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHICMLLTDEFRRLPKNHKAREDKLELILFNMKAAAVLINKSHH 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme19514g00001 191 SUPERFAMILY Clavaminate synthase-like 45 174 - -
Trme19514g00001 191 SMART cupin_9 2 159 IPR003347 -
Trme19514g00001 191 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 4 182 IPR045109 GO:0032454|GO:0033169
Trme19514g00001 191 ProSiteProfiles JmjC domain profile. 1 159 IPR003347 -
Trme19514g00001 191 Pfam JmjC domain, hydroxylase 40 142 IPR003347 -
Trme19514g00001 191 MobiDBLite consensus disorder prediction 1 28 - -
Trme19514g00001 191 FunFam Transcription factor jumonji (JmjC) domain-containing protein 1 168 - -
Trme19514g00001 191 Gene3D Cupin 1 168 - -
Trme19514g00001 191 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme19514g00001 Trme-Chr19514 67 1202 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trme19514g00001 JmjC 7.7e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme19514g00001 K15601 - gmx:100801772 278.485