Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme194920g00001 ATGAGTTTTCCAAACGAATCCATGCCAGATTCTCCCCAAAGAAATTCAGCTTTGAAGATTGGAAGGGGAAAGATTGAGATCAAGCGAATCGAAAACACAACAAATCGCCAAGTTACTTTTTGTAAGCGTCGAAATGGCTTGCTTAAGAAGGCATATGAATTATCTGTGCTTTGTGATGCTGAAGTTGCTCTTATAGTCTTCTCGACTCGCGGCCGTCTCTATGAATATGCAAATAACAGGTAA 243 0.4033 MSFPNESMPDSPQRNSALKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNR 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme194920g00001 80 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Trme194920g00001 80 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Trme194920g00001 80 SUPERFAMILY SRF-like 21 79 IPR036879 GO:0003677|GO:0046983
Trme194920g00001 80 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Trme194920g00001 80 CDD MADS_MEF2_like 21 79 IPR033896 GO:0000977|GO:0045944
Trme194920g00001 80 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Trme194920g00001 80 PANTHER SERUM RESPONSE FACTOR HOMOLOG 8 79 - -
Trme194920g00001 80 Gene3D - 32 80 IPR036879 GO:0003677|GO:0046983
Trme194920g00001 80 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Trme194920g00001 80 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Trme194920g00001 80 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Trme194920g00001 80 FunFam MADS-box transcription factor 21 32 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme194920g00001 Trme-Chr194920 201 443 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme194920g00001 16 79 MADS-box Gene Family AT2G42830 93.750 2.69e-39 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme194920g00001 SRF-TF 2.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme194920g00001 K09264 - twl:120014444 133.265